View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1168_low_27 (Length: 283)
Name: NF1168_low_27
Description: NF1168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1168_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 5726765 - 5727039
Alignment:
| Q |
1 |
taggaattcaatactcttcccatccaaatcaccgacgggtagcaagtttatcaactttacccccaccaaaatcacaagctgaatgggctgccatatccta |
100 |
Q |
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| T |
5726765 |
taggaattcaatactcttccctgccaaatcacctacgggtagcaagtttatcagctttacccccaccaaaatcacaagctgaatgggctgccatatcctg |
5726864 |
T |
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| Q |
101 |
cttagtgaccattaattaactaacaggagccttaattttttgaaaaaacataacttgtcatttatataattggatcacaaggagaattc-aagatgaaat |
199 |
Q |
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| T |
5726865 |
cttagtgaccattaattaactaacaggagccttaattttttgaaaaaacataacttgtcatttatataattggatcacaaggagaattcaaagatgaaat |
5726964 |
T |
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| Q |
200 |
gtgcagttccttaaattgtagttatagggtggacggggcgacgacggtggtggtggggaagggtgttatctgtgg |
274 |
Q |
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| T |
5726965 |
gtgcagttccttaaattgtagttatagggtggacggggcgacgacggtggtggtggggaagggtgttatcggtgg |
5727039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 41 - 223
Target Start/End: Original strand, 46119770 - 46119957
Alignment:
| Q |
41 |
agcaagtttatcaactttacccccaccaaaatcacaagctgaatgggctgccatatcctac-----ttagtgaccattaattaactaacaggagccttaa |
135 |
Q |
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||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||| |||||||||||| |
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| T |
46119770 |
agcaagtttctcagctttacccccaccaaaatcacaagctgaatgggctgccatatcctgcacatgtcagtgaccattaattaactagcaggagccttaa |
46119869 |
T |
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| Q |
136 |
ttttttgaaaaaacataacttgtcatttatataattggatcacaaggagaattcaagatgaaatgtgcagttccttaaattgtagtta |
223 |
Q |
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| T |
46119870 |
atttctgacaaaacataaattttcatttatataattggatcagaaggagaattcaagatgaaatgtgcagttccttaaattgcagtta |
46119957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 118
Target Start/End: Original strand, 34949092 - 34949207
Alignment:
| Q |
3 |
ggaattcaatactcttcccatccaaatcaccgacgggtagcaagtttatcaactttacccccaccaaaatcacaagctgaatgggctgccatatcctact |
102 |
Q |
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||||||||||||||||||| |||||||||| | |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34949092 |
ggaattcaatactcttccctgccaaatcacctgccggtagcaaatttatcagctttacccccaccaaaatcacaagctgaatgggctgccatatcctgct |
34949191 |
T |
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| Q |
103 |
tagtgaccattaatta |
118 |
Q |
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| T |
34949192 |
cagtgaccattaatta |
34949207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 213 - 274
Target Start/End: Original strand, 34949203 - 34949264
Alignment:
| Q |
213 |
aattgtagttatagggtggacggggcgacgacggtggtggtggggaagggtgttatctgtgg |
274 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34949203 |
aattatagttatagggtggacggggcgacgacggtggtggtggggaagggtgttatcggtgg |
34949264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 13779877 - 13779913
Alignment:
| Q |
63 |
ccaccaaaatcacaagctgaatgggctgccatatcct |
99 |
Q |
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| T |
13779877 |
ccaccaaaatcacaggctgaatgggctgccatatcct |
13779913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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