View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1168_low_28 (Length: 265)
Name: NF1168_low_28
Description: NF1168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1168_low_28 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 3080204 - 3079960
Alignment:
| Q |
1 |
ctgtattaaaaatggtaaatgtcattataaataaaaggtaaatgtccacttagttgagtattttttaaaatctaagagaattgggttaaatggtatcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3080204 |
ctgtattaaaaatggtaaatgtcattataaataaaaggtaaatgtccacttagttgagtattttttaaaatctaagagaattgggttaaatggtatcatt |
3080105 |
T |
|
| Q |
101 |
gaaatggaagttttgcgacttattgcgatcatatttaattcgataaggctaatatttgtagatatgcatagagtatatcttattnnnnnnnntatttatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||| | | |
|
|
| T |
3080104 |
gaaatggaagttttgcgacttattgcgattatatttaattcgataaggctaatctttgtagatatgcaaagagtatatcttattaaaaaaaaataaaaat |
3080005 |
T |
|
| Q |
201 |
tataagttaatattaaacaactcatttggattggtttgatgatgt |
245 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3080004 |
tataagttaatattaaacaactaatttggattggtttgatgatgt |
3079960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University