View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1168_low_3 (Length: 669)
Name: NF1168_low_3
Description: NF1168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1168_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 397 - 659
Target Start/End: Original strand, 28266343 - 28266604
Alignment:
| Q |
397 |
gagggagtactatttaaaagtgaataattatctctttacaaggtaaaagaatagagttgggctccacaannnnnnnnccttccatctctataagagattc |
496 |
Q |
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| T |
28266343 |
gagggagtaatatttaaaagtgaataattatctctttacaaggtaaaagaatagagttgggctccacaaatttttt-ccttccatctctataagagattc |
28266441 |
T |
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| Q |
497 |
aaacaatgaaaagtgtctttttcaatcaagtttatttcccattttttcttactttctttccatcaccataatggtcaaaaatagttacttgatcatgtta |
596 |
Q |
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| T |
28266442 |
aaacaatgaaaagtgtctttttcaattaagtttatttcccattttttcttactttctttccatcaccatgatggtcaaaaatagttacttgatcatgtta |
28266541 |
T |
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| Q |
597 |
gatggaccctttcaacatagtatggaactggattggtcctttttgaatccatacttacctttg |
659 |
Q |
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| T |
28266542 |
gatggaccctttcaacatagtatggaagtggattggtcctttttgaatccatacttacctttg |
28266604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 159 - 316
Target Start/End: Original strand, 28266096 - 28266252
Alignment:
| Q |
159 |
atcatttaggatggtggacaaactcttttgcaccatcatggtgatgttaggaatga--atggaggtatatttttgggttagtcactatatgtttttaaaa |
256 |
Q |
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| T |
28266096 |
atcatttaggatggtggacaaactcttttggaccatcatggtgatgttaggaatgaatatggcggtatgtttttgggttagtcac--aatgtttttaaaa |
28266193 |
T |
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| Q |
257 |
ttcctcctacttgtattgaacaattttttattaacgacagtcagttaaatttgtttcgtt |
316 |
Q |
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| T |
28266194 |
ttcctcctacttgtattgaacaattttttattaatgaca-tcagttaaatttgtttcgtt |
28266252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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