View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1168_low_31 (Length: 251)
Name: NF1168_low_31
Description: NF1168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1168_low_31 |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 106 - 251
Target Start/End: Original strand, 5726640 - 5726785
Alignment:
| Q |
106 |
atccgtcaccatcaccaccgtcgtccccacccttgtcttgatcggtgaaagcagctaggagcaatccaaactcttcaggagtcaatgggcaacgcttctg |
205 |
Q |
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| T |
5726640 |
atccgtcaccaccaccaccgtcgcccccacccttgtcttgatcggtgaaagcaactaggggcaatccaaactcttcgggagtcagtgggcaacgcttatg |
5726739 |
T |
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| Q |
206 |
atttctcaactcttcatcattgaattaggaattcaatactcttccc |
251 |
Q |
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| T |
5726740 |
atttctcaactcttcatcattgaattaggaattcaatactcttccc |
5726785 |
T |
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Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 106 - 251
Target Start/End: Original strand, 34948965 - 34949110
Alignment:
| Q |
106 |
atccgtcaccatcaccaccgtcgtccccacccttgtcttgatcggtgaaagcagctaggagcaatccaaactcttcaggagtcaatgggcaacgcttctg |
205 |
Q |
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| T |
34948965 |
atccgtcaccacaaccaccgtcgcccccacctctgtcttgatcggtgaaagcagctaggagcaatccaaactcttcaggagtcagtggacaacactcatg |
34949064 |
T |
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| Q |
206 |
atttctcaactcttcatcattgaattaggaattcaatactcttccc |
251 |
Q |
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| T |
34949065 |
atttcttaactcttgatcattgaattgggaattcaatactcttccc |
34949110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 153 - 251
Target Start/End: Original strand, 46119642 - 46119740
Alignment:
| Q |
153 |
aaagcagctaggagcaatccaaactcttcaggagtcaatgggcaacgcttctgatttctcaactcttcatcattgaattaggaattcaatactcttccc |
251 |
Q |
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| T |
46119642 |
aaagcagctaggagcaatccaatctcttcgggagtcagtgggcaacgcccctgatttctcaactcttcatcattgaattgggaattcaatactcttccc |
46119740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 238
Target Start/End: Original strand, 13779727 - 13779812
Alignment:
| Q |
153 |
aaagcagctaggagcaatccaaactcttcaggagtcaatgggcaacgcttctgatttctcaactcttcatcattgaattaggaatt |
238 |
Q |
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| T |
13779727 |
aaagcagctagcaacaatccgacttcctcgggagtcattgggcaacgtccctgacttctcaactcttcatcagtgaattgggaatt |
13779812 |
T |
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