View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1168_low_37 (Length: 215)

Name: NF1168_low_37
Description: NF1168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1168_low_37
NF1168_low_37
[»] chr7 (4 HSPs)
chr7 (1-112)||(14737921-14738032)
chr7 (1-59)||(19358512-19358570)
chr7 (1-55)||(19722628-19722682)
chr7 (1-51)||(19887137-19887187)
[»] chr5 (1 HSPs)
chr5 (1-112)||(17588664-17588775)
[»] chr3 (2 HSPs)
chr3 (1-84)||(32578246-32578330)
chr3 (1-57)||(12734226-12734282)
[»] chr2 (3 HSPs)
chr2 (14-82)||(18912946-18913014)
chr2 (25-112)||(18920169-18920256)
chr2 (1-51)||(18908362-18908412)
[»] chr6 (1 HSPs)
chr6 (18-84)||(14749963-14750030)
[»] scaffold0464 (1 HSPs)
scaffold0464 (1-57)||(8657-8713)


Alignment Details
Target: chr7 (Bit Score: 112; Significance: 8e-57; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 14737921 - 14738032
Alignment:
Q  1 agtagtagagtgaaatgttaaagtgagaaacatgtcaatgggttggttacacatatcttaaacttgaacaaatttattatctatctatagatttacacat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14737921 agtagtagagtgaaatgttaaagtgagaaacatgtcaatgggttggttacacatatcttaaacttgaacaaatttattatctatctatagatttacacat 14738020  T
Q  101 atatgagaaaag 112  Q
    ||||||||||||    
T  14738021 atatgagaaaag 14738032  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 19358512 - 19358570
Alignment:
Q  1 agtagtagagtgaaatgttaaagtgagaaacatgtcaatgggttggttacacatatctt 59  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  19358512 agtagtagagtgaaatgttaaagcgagaaacatgtcaatgggttggttacagatatctt 19358570  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 19722628 - 19722682
Alignment:
Q  1 agtagtagagtgaaatgttaaagtgagaaacatgtcaatgggttggttacacata 55  Q
    |||||||||||||| | ||||| ||| ||||||||||||||||| ||||||||||    
T  19722628 agtagtagagtgaatttttaaattgacaaacatgtcaatgggttcgttacacata 19722682  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 19887187 - 19887137
Alignment:
Q  1 agtagtagagtgaaatgttaaagtgagaaacatgtcaatgggttggttaca 51  Q
    |||||||||||  |||||||||| | ||||||||||||| |||||||||||    
T  19887187 agtagtagagtctaatgttaaagcgtgaaacatgtcaataggttggttaca 19887137  T

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Target: chr5 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 17588775 - 17588664
Alignment:
Q  1 agtagtagagtgaaatgttaaagtgagaaacatgtcaatgggttggttacacatatcttaaacttgaacaaatttattatctatctatagatttacacat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17588775 agtagtagagtgaaatgttaaagtgagaaacatgtcaatgggttggttacacatatcttaaacttgaacaaatttattatctatctatagatttacacat 17588676  T
Q  101 atatgagaaaag 112  Q
    ||||||||||||    
T  17588675 atatgagaaaag 17588664  T

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Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 32578330 - 32578246
Alignment:
Q  1 agtagtagagtgaaatgttaaagtgagaaacatgtcaatgggttggttacacatatc-ttaaacttgaacaaatttattatctat 84  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||| ||||| ||| |||||| || |||||||||||||    
T  32578330 agtagtagagtgaaatgttaaagctagaaacatgtcaatgggttggttacaaatatctttagacttgagcagatttattatctat 32578246  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 12734282 - 12734226
Alignment:
Q  1 agtagtagagtgaaatgttaaagtgagaaacatgtcaatgggttggttacacatatc 57  Q
    |||||||||| ||||| |||||  ||||||||||||||||||| ||||||| |||||    
T  12734282 agtagtagagcgaaattttaaatcgagaaacatgtcaatgggtgggttacaaatatc 12734226  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 18913014 - 18912946
Alignment:
Q  14 aatgttaaagtgagaaacatgtcaatgggttggttacacatatcttaaacttgaacaaatttattatct 82  Q
    |||||||||| ||||||||||||||||| ||||||||| |||| ||  ||||| |||||||||||||||    
T  18913014 aatgttaaagcgagaaacatgtcaatggtttggttacaaatatatttgacttggacaaatttattatct 18912946  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 18920256 - 18920169
Alignment:
Q  25 gagaaacatgtcaatgggttggttacacatat-cttaaacttgaacaaatttattatctatctatagatttacacatatatgagaaaag 112  Q
    ||||| ||||||||||||||||||||| |||| |||| ||||| ||||||||||| ||||| ||| ||| || ||||| ||||||||||    
T  18920256 gagaatcatgtcaatgggttggttacaaatatccttagacttggacaaatttattgtctat-tattgatctatacatagatgagaaaag 18920169  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 18908412 - 18908362
Alignment:
Q  1 agtagtagagtgaaatgttaaagtgagaaacatgtcaatgggttggttaca 51  Q
    ||||||| |||||||||||||||  ||||||||||||| || |||||||||    
T  18908412 agtagtaaagtgaaatgttaaagcaagaaacatgtcaacggtttggttaca 18908362  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 14749963 - 14750030
Alignment:
Q  18 ttaaagtgagaaacatgtcaatgggttggttacacatatc-ttaaacttgaacaaatttattatctat 84  Q
    |||||| ||||||||||||||| |||||||||||  |||| ||| |||||| ||||||||||||||||    
T  14749963 ttaaagcgagaaacatgtcaataggttggttacaactatctttagacttgagcaaatttattatctat 14750030  T

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Target: scaffold0464 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 8657 - 8713
Alignment:
Q  1 agtagtagagtgaaatgttaaagtgagaaacatgtcaatgggttggttacacatatc 57  Q
    |||||||||||||||| |||||  |||||||| |||||||||| ||||||| |||||    
T  8657 agtagtagagtgaaattttaaatcgagaaacaggtcaatgggtgggttacaaatatc 8713  T

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