View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1168_low_6 (Length: 567)
Name: NF1168_low_6
Description: NF1168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1168_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 1e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 261 - 451
Target Start/End: Complemental strand, 5656585 - 5656395
Alignment:
| Q |
261 |
atatgcataagaaattgaaagcaaaaatagaaagagtagaaagaatctgaattgatgagtcaatggatacatgtacatgttgctattatagcaaccttag |
360 |
Q |
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| T |
5656585 |
atatgcataagatattgaaagcaaaaatagaaagagtagaaagaatctgaattgatgagtcaatggatacatgtacatgttgctattatagcagccttag |
5656486 |
T |
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| Q |
361 |
ttggatgtatttcaacccttttgtttgttttcatgttgtggttttgtcatcacaaaaaagatcaaaagagatttgttgaatcaaatagctt |
451 |
Q |
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| T |
5656485 |
ttggatgtatttcaacccttttgtttgttttcatgttgtggttttgtcatcacaaaaaagatcaaaagagatttgttgaatcaaatagctt |
5656395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 3 - 201
Target Start/End: Complemental strand, 5656833 - 5656632
Alignment:
| Q |
3 |
catgtccaacaatatgtcttgtaacggcaaaccaatttatcgttttttaatgagtgtttgtgggttcccataaactaaatgaaaaggaactgacaaagaa |
102 |
Q |
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|||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5656833 |
catgcccaaaaagatgtcttgtaacggcaaaccaatttatcgttttttaatgagtgtttgtgggttcccataaacaaaatgaaaaggaactgacaaagaa |
5656734 |
T |
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| Q |
103 |
tatgcactccaag---nnnnnnnnctcatgtgttacttttggttttggtaacaactcgattctgccacctttgattaatcaaaccttagtccacgcaaac |
199 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5656733 |
tatgcactccaagaaaaaaaaaaactcatgtgttacttttggttttggtaacaactcgattctgccacctttgattaatcaaaccttagtccacgcaaac |
5656634 |
T |
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| Q |
200 |
aa |
201 |
Q |
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|| |
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| T |
5656633 |
aa |
5656632 |
T |
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