View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1168_low_8 (Length: 541)
Name: NF1168_low_8
Description: NF1168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1168_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 10 - 476
Target Start/End: Original strand, 6000865 - 6001332
Alignment:
| Q |
10 |
aagaatatgcagaaggcaagtttacattcacagaattagaatttaaacaagagagtttaataatcatatcacgtccgcatctcgaataatatcgctaaaa |
109 |
Q |
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| T |
6000865 |
aagaaaatgcagaaggcaagtttacattcacagaattagaatttaaacaagagagtttaataatcatatcacgtccgcatccataatcaaatcgctaaaa |
6000964 |
T |
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| Q |
110 |
tattcaaatgtaacatggtagttgcctctcttcaaaaactagaaacaaaaacatagctttaattagggttcttcttttggcttcttcaccaggtggaaca |
209 |
Q |
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| T |
6000965 |
tattccaatgtaacatggtagttgcctctcttcaaaaactagaaacaaaaacatagctttaattagggttcttcttttggcttcttcaccaggtggaaca |
6001064 |
T |
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| Q |
210 |
aggcctctgtcaatacagcttcggaagaagtcaaagaagctcccagcaggttcagtgcctaacagaatagc-aaaaataacaagtcattacttctcacaa |
308 |
Q |
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| T |
6001065 |
aggcctctgtcaatacagcttcggaagaagtcaaagaagctcccagcaggttcagggtctaacagtatagcaaaaaataacaagtcattacttctcacaa |
6001164 |
T |
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| Q |
309 |
ttttaataatgaacatgcataacttttgtaaacaaaggtatatctcacgctcaactgcggagacatttgatattatagtaatcaatattgcttagtaaat |
408 |
Q |
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| T |
6001165 |
ttttaataatgaacatgcataacttttgtaaacaaaggtatatctcacgctcaactgcggagacatttgatattatagtaatcaatattgcttagtaaat |
6001264 |
T |
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| Q |
409 |
tcattgataataatcattctatttcaaagtatcaatattcaagagtaaattagtgtttacctctgtcc |
476 |
Q |
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| T |
6001265 |
tcattgataataatcattctatttcaaagtatcaatattcaagagtaaattagtgtttaccactgtcc |
6001332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 6010372 - 6010409
Alignment:
| Q |
232 |
ggaagaagtcaaagaagctcccagcaggttcagtgcct |
269 |
Q |
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| T |
6010372 |
ggaagaagtcaaagaagctcccaacaggttcagtgcct |
6010409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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