View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11690_high_12 (Length: 467)
Name: NF11690_high_12
Description: NF11690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11690_high_12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 19 - 467
Target Start/End: Original strand, 39976630 - 39977074
Alignment:
| Q |
19 |
agaaaatacacaaaaatgttttatagatatctttaatttgccaaccctttnnnnnnnn-ttgtttaaaacttaccttgcaagtggaaatgaaaagatgat |
117 |
Q |
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| T |
39976630 |
agaaaatacacaaaaaagttttatagatatcttt-----gccaaccctttaaaaaaaaattgtttaaaacttaccttgcaagtggatatgaaaagatgat |
39976724 |
T |
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| Q |
118 |
gatgtaaacttgaagttccaattccaatatcaggttttctatcaccaaaatactccttaagtgctctatgcttaacaagtaagccagaactagtgagaaa |
217 |
Q |
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| T |
39976725 |
gatgtaaacttgaagttccaattccaatatcaggttttctatcaccaaaatactccttaagtgctctatgcttaacaagtaagccagaactagtgagaaa |
39976824 |
T |
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| Q |
218 |
accagtgaagtagcaaccaaaagtgtgtaactctgtgcctaaaacatcaccgacactcaaatactctttcaaaaatccttctaccataactctaggcaca |
317 |
Q |
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| T |
39976825 |
accagtgaagtagcaaccaaaagtgtgtaactctgtgcctaaaacatcaccgacactcaaatactctttcaaaaatccttctaccataactctaggcaca |
39976924 |
T |
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| Q |
318 |
cttgtgataacaactttagacccagctgaagcaagaatctcataaacttgaagattaagattctctaaataaaactttggtaaaacagcccttgaaacat |
417 |
Q |
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| T |
39976925 |
cttgtgataacaactttagacccagctgaagcaagaatctcataaacttgaagattaagattctctaaataaaactttggtaaaacagcccttgaaacat |
39977024 |
T |
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| Q |
418 |
tttccatgtcctttattcttaaaccacaaaaggttataaaagtcataatc |
467 |
Q |
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| T |
39977025 |
tttccatgtcctttattcctaaaccacaaaaggttataaaagtcataatc |
39977074 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 216 - 318
Target Start/End: Complemental strand, 16193668 - 16193566
Alignment:
| Q |
216 |
aaaccagtgaagtagcaaccaaaagtgtgtaactctgtgcctaaaacatcaccgacactcaaatactctttcaaaaatccttctaccataactctaggca |
315 |
Q |
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||||||||||||||||| |||| |||||||||||||||| | | || |||| | || ||||||| || || | ||| ||||| |||||||||||||||| |
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| T |
16193668 |
aaaccagtgaagtagcatccaacagtgtgtaactctgtggcaacaatatcatcaccattcaaatattccttaagaaacccttccaccataactctaggca |
16193569 |
T |
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| Q |
316 |
cac |
318 |
Q |
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| T |
16193568 |
cac |
16193566 |
T |
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