View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11690_high_13 (Length: 432)
Name: NF11690_high_13
Description: NF11690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11690_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 3e-86; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 236 - 417
Target Start/End: Original strand, 5848290 - 5848471
Alignment:
| Q |
236 |
gttatacacaaaggatgaaatgattgttgcagtaaaacaatagcataacataagatgcatactctagactaattaaggtagtcaactctcacacgtatat |
335 |
Q |
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| T |
5848290 |
gttatacacaaaggatgaaatgattgttgcagtaaaacaatagcataacataacatgcatactctagactaattaaggtagtcaactctcacacgtgtat |
5848389 |
T |
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| Q |
336 |
gtttgttgatggattgtgcaagacatctctaataaatgaagcaaacctatgagatcacgaccctaactggaatcatacatgt |
417 |
Q |
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| T |
5848390 |
gtttgttgatggattgtgcaagacatcaataataaatgaagcaaacctatgagatcacgaccctaaccggaatcatacatgt |
5848471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 133 - 231
Target Start/End: Original strand, 5847635 - 5847729
Alignment:
| Q |
133 |
aaagaaaatgtgtttatatcttcatgttcatatgataattgttcgtctattataagccattgatttatttatgagtttaaaattcagtcgacatgactt |
231 |
Q |
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| T |
5847635 |
aaagaaaatgtgtttatatcttcatgttcatatgataattgttcgtctattataagccattg----atttatgagtttgaaattcagtcgacatgactt |
5847729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 5847511 - 5847560
Alignment:
| Q |
9 |
agcagagacagtacggctcaatgtatacaaatatttggacacaaacacat |
58 |
Q |
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| T |
5847511 |
agcagagacagtacggcataatgtatacaaatatttagacacaaacacat |
5847560 |
T |
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