View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11690_high_16 (Length: 366)
Name: NF11690_high_16
Description: NF11690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11690_high_16 |
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| [»] chr5 (2 HSPs) |
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| [»] chr1 (6 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 17 - 366
Target Start/End: Original strand, 35079469 - 35079818
Alignment:
| Q |
17 |
catatttgacagccaagcttatcgtttccggatcctcgcgcaatgcaccttgtacctcgctaaccaccgtattgtaatcatcaccgcattctttgatagg |
116 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35079469 |
catatttgacagccaagcttatcatttccggatcctcgcgcaatgcaccttgtacctcgctaaccaccgtattgtaatcatcaccgcattctttgatagg |
35079568 |
T |
|
| Q |
117 |
ttgagaagaaggatattttttcacaatttctttgactcgatgttgggattttattgccttctttattgccacaatctttaaaaaggacctgcaaaaggtt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35079569 |
ttgagaagaaggatattttttcacaatttctttgactcgatgttgggattttattgccttctttattgccacagtctttaaaaaggacctgcaaaaggtt |
35079668 |
T |
|
| Q |
217 |
agataatctttgatcaaggtaattttagggtaagcttctataagtttgagacaacgttgttcgaattctttctgacgaggttctttacatacacttttgt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35079669 |
agataatctttgatcaaggtaattttagggtaagcttctataagtttgagacaacgttgttcgaattctttctgacgaggttctttacatacacttttgt |
35079768 |
T |
|
| Q |
317 |
acaacttggggcttggtgttggtagtgaaatggcatgggaaataaagatc |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35079769 |
acaacttggggcttggtgttggtagtgaaatggcatgggaaataaagatc |
35079818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 366
Target Start/End: Original strand, 35074500 - 35074846
Alignment:
| Q |
17 |
catatttgacagccaagcttatcgtttccggatcctcgcgcaatgcaccttgtacctcgctaaccaccgtattgtaatcatcaccgcattctttgatagg |
116 |
Q |
| |
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|||| |||||||||| ||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||| || |
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| T |
35074500 |
cataattgacagccatgcttatcatttccggatcctcacgcaatgcaccttgtacctcgataaccaccgtattgtaatcatccccacattctttgatggg |
35074599 |
T |
|
| Q |
117 |
ttgagaagaaggatattttttcacaatttctttgactcgatgttgggattttattgccttctttattgccacaatctttaaaaaggacctgcaaaaggtt |
216 |
Q |
| |
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|||||||||||||||||| |||| ||| ||||| ||| | ||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||| ||| |
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| T |
35074600 |
ttgagaagaaggatatttgttcataatctctttaacttgttgttgggattttactgccttctctattgccacaatctttaaaaatgacctgcaaaaagtt |
35074699 |
T |
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| Q |
217 |
agataatctttgatcaaggtaattttagggtaagcttctataagtttgagacaacgttgttcgaattctttctgacgaggttctttacatacacttttgt |
316 |
Q |
| |
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|||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||| || ||||| |||| || |||||| |||| || || || |
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| T |
35074700 |
agataatcttcgatcaaagtaatttgagggtaagcttctataagtttgagacaacgttgttcaaagtctttttgaccagattctttgcatatacgttcgt |
35074799 |
T |
|
| Q |
317 |
acaacttggggcttggtgttggtagtgaaatggcatgggaaataaagatc |
366 |
Q |
| |
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||||||| ||||||||||||| |||||| |||||| ||||||||||| |
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| T |
35074800 |
acaacttagggcttggtgttg---gtgaaagggcatgacaaataaagatc |
35074846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 155; Significance: 3e-82; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 86 - 366
Target Start/End: Original strand, 23914856 - 23915133
Alignment:
| Q |
86 |
tattgtaatcatcaccgcattctttgataggttgagaagaaggatattttttcacaatttctttgactcgatgttgggattttattgccttctttattgc |
185 |
Q |
| |
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|||| ||||||| | | ||||||||||| ||||||||||||||||||||||||| ||||||||| ||| | ||||||||||||||||||||| |||||| |
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| T |
23914856 |
tattataatcattagcacattctttgatgggttgagaagaaggatattttttcataatttctttaacttgttgttgggattttattgccttccctattgc |
23914955 |
T |
|
| Q |
186 |
cacaatctttaaaaaggacctgcaaaaggttagataatctttgatcaaggtaattttagggtaagcttctataagtttgagacaacgttgttcgaattct |
285 |
Q |
| |
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| ||||||||||||| |||||||||||||| ||||||||||||||||| |||||| ||||||| ||||||| ||||||||||| ||||||||||| ||| |
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| T |
23914956 |
cgcaatctttaaaaatgacctgcaaaaggtaagataatctttgatcaaagtaattggagggtaaccttctattagtttgagacagcgttgttcgaagtct |
23915055 |
T |
|
| Q |
286 |
ttctgacgaggttctttacatacacttttgtacaacttggggcttggtgttggtagtgaaatggcatgggaaataaagatc |
366 |
Q |
| |
|
||||||| ||||| ||| |||||| ||| |||||||||| |||||||||||| ||||| |||||||||||||||||||| |
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|
| T |
23915056 |
ttctgaccaggttgtttgcatacattttggtacaacttgaggcttggtgttg---gtgaattggcatgggaaataaagatc |
23915133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 86 - 339
Target Start/End: Original strand, 23922493 - 23922746
Alignment:
| Q |
86 |
tattgtaatcatcaccgcattctttgataggttgagaagaaggatattttttcacaatttctttgactcgatgttgggattttattgccttctttattgc |
185 |
Q |
| |
|
|||| ||||||||| | ||||||||||| ||||||||||||||||||||||||| ||||||||| ||| | ||||||||||||| ||||||||||||||| |
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| T |
23922493 |
tattataatcatcaacacattctttgattggttgagaagaaggatattttttcataatttctttaacttgttgttgggattttactgccttctttattgc |
23922592 |
T |
|
| Q |
186 |
cacaatctttaaaaaggacctgcaaaaggttagataatctttgatcaaggtaattttagggtaagcttctataagtttgagacaacgttgttcgaattct |
285 |
Q |
| |
|
| || |||||||||| |||||| |||||| |||||||||| ||||| |||||||| |||||||||||||||||||| | |||||||||||| || ||| |
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| T |
23922593 |
cgcattctttaaaaatgacctgacaaaggtaagataatcttcaatcaaagtaattttggggtaagcttctataagtttcaaacaacgttgttcaaagtct |
23922692 |
T |
|
| Q |
286 |
ttctgacgaggttctttacatacacttttgtacaacttggggcttggtgttggt |
339 |
Q |
| |
|
|| |||| |||| |||| |||||| ||| |||||||||||||||||||| |||| |
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| T |
23922693 |
ttttgaccaggtgctttgcatacattttggtacaacttggggcttggtgctggt |
23922746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 17 - 334
Target Start/End: Original strand, 25802846 - 25803163
Alignment:
| Q |
17 |
catatttgacagccaagcttatcgtttccggatcctcgcgcaatgcaccttgtacctcgctaaccaccgtattgtaatcatcaccgcattctttgatagg |
116 |
Q |
| |
|
|||||||||||||||| | |||| |||||||||||| |||||| |||| |||||| |||||| ||| ||||||||||| || ||| |||| || |
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| T |
25802846 |
catatttgacagccaaccctatcaattccggatcctcagccaatgctccttttacctcaacaaccacggtactgtaatcatcaaaacactctctgatggg |
25802945 |
T |
|
| Q |
117 |
ttgagaagaaggatattttttcacaatttctttgactcgatgttgggattttattgccttctttattgccacaatctttaaaaaggacctgcaaaaggtt |
216 |
Q |
| |
|
| ||||||||||||||||| ||||||| ||||| |||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||| |
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|
| T |
25802946 |
atcagaagaaggatatttttcagtaatttctctgactacttgttgggattttattgccttgtctattgccacaatctttaaaaatgacctgcaaaaggtt |
25803045 |
T |
|
| Q |
217 |
agataatctttgatcaaggtaattttagggtaagcttctataagtttgagacaacgttgttcgaattctttctgacgaggttctttacatacacttttgt |
316 |
Q |
| |
|
|||||||||| |||||| || |||| |||||||| |||||| || || || |||||||||||||| ||||| || | |||||||||||||| ||| || |
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| T |
25803046 |
agataatcttcgatcaaagtgatttgagggtaagattctattagcttcaggcaacgttgttcgaagtctttttggccgggttctttacatacgttttggt |
25803145 |
T |
|
| Q |
317 |
acaacttggggcttggtg |
334 |
Q |
| |
|
||||||| |||||||||| |
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| T |
25803146 |
acaacttagggcttggtg |
25803163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 228
Target Start/End: Original strand, 24436008 - 24436129
Alignment:
| Q |
107 |
ctttgataggttgagaagaaggatattttttcacaatttctttgactcgatgttgggattttattgccttctttattgccacaatctttaaaaaggacct |
206 |
Q |
| |
|
||||||| | ||||||||||||||| |||||| |||||||||||| ||||||||| |||| |||| |||| ||||||||||||| ||||||| | || |
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| T |
24436008 |
ctttgatggtttgagaagaaggatactttttcttcatttctttgacttgatgttgggcttttgttgcattctctattgccacaatccttaaaaataatct |
24436107 |
T |
|
| Q |
207 |
gcaaaaggttagataatctttg |
228 |
Q |
| |
|
|||| ||||||||||||||| |
|
|
| T |
24436108 |
tgaaaaagttagataatctttg |
24436129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 120 - 331
Target Start/End: Complemental strand, 23995448 - 23995237
Alignment:
| Q |
120 |
agaagaaggatattttttcacaatttctttgactcgatgttgggattttattgccttctttattgccacaatctttaaaaaggacctgcaaaaggttaga |
219 |
Q |
| |
|
||||||||| ||||| ||| |||||||||||| ||||||| | |||| ||| |||||||||||||||||||||| | | | ||| |||| || ||| |
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|
| T |
23995448 |
agaagaagggtatttgttcttcatttctttgacttgatgttgagcttttcctgcattctttattgccacaatctttagatataatctggaaaatgtaaga |
23995349 |
T |
|
| Q |
220 |
taatctttgatcaaggtaattttagggtaagcttctataagtttgagacaacgttgttcgaattctttctgacgaggttctttacatacacttttgtaca |
319 |
Q |
| |
|
||||||| | || | ||||||| |||||| ||||||| ||| | || |||||||| || ||||| || |||| ||| ||||||||||||| ||||| |
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|
| T |
23995348 |
taatcttcggtcgaagtaatttgagggtaggcttctaatgttttcaagcagcgttgttcaaaatctttgtggcgagattccttacatacactttggtaca |
23995249 |
T |
|
| Q |
320 |
acttggggcttg |
331 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
23995248 |
acttagggcttg |
23995237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 366
Target Start/End: Original strand, 24436204 - 24436270
Alignment:
| Q |
297 |
ttctttacatacacttttgtacaacttggggcttggtgttggtagtgaaatggcatgggaaataaagatc |
366 |
Q |
| |
|
|||||||||||||||||| ||||| || ||||||| ||||| |||||||||| || |||||||||||| |
|
|
| T |
24436204 |
ttctttacatacacttttatacaagttagggcttgatgttg---gtgaaatggcgtgagaaataaagatc |
24436270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 102 - 366
Target Start/End: Complemental strand, 13436089 - 13435828
Alignment:
| Q |
102 |
gcattctttgataggttgagaagaaggatattttttcacaatttctttgactcgatgttgggattttattgccttctttattgccacaatctttaaaaag |
201 |
Q |
| |
|
|||| ||||||| | ||||||||| |||||||||||| |||||||||||| ||||||| |||| |||| || | ||||||||||||| ||||||| |
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|
| T |
13436089 |
gcatcctttgatggcttgagaagagggatattttttcgtcatttctttgactttatgttggacttttgttgcattatctattgccacaatccttaaaaat |
13435990 |
T |
|
| Q |
202 |
gacctgcaaaaggttagataatctttgatcaaggtaattttagggtaagcttctataagtttgagacaacgttgttcgaattctttctgacgaggttctt |
301 |
Q |
| |
|
| || ||||||| ||||||||| || | ||||||| ||||| | ||||| |||||| | ||| ||||||| | || || || | ||||| |
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| T |
13435989 |
aatcttgaaaaggtaagataatctatggctgaagtaatttgtgggtaggtttctaaaagtttcaagcaaggttgttcatagggttccttaccaatttctt |
13435890 |
T |
|
| Q |
302 |
tacatacacttttgtacaacttggggcttggtgttggtagtgaaatggcatgggaaataaagatc |
366 |
Q |
| |
|
||||||||||||||||||| || ||||||| ||| | |||||||||| || |||||||||||| |
|
|
| T |
13435889 |
tacatacacttttgtacaaattagggcttgatgt---tcgtgaaatggcgtgagaaataaagatc |
13435828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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