View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11690_high_4 (Length: 726)

Name: NF11690_high_4
Description: NF11690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11690_high_4
NF11690_high_4
[»] chr6 (13 HSPs)
chr6 (15-707)||(3774474-3775162)
chr6 (80-143)||(3775137-3775199)
chr6 (24-89)||(32976023-32976088)
chr6 (14-71)||(4420678-4420735)
chr6 (23-95)||(34538172-34538244)
chr6 (14-70)||(34939779-34939835)
chr6 (42-97)||(8420149-8420204)
chr6 (36-95)||(32917254-32917313)
chr6 (23-97)||(283139-283213)
chr6 (26-96)||(2455857-2455927)
chr6 (23-97)||(2732199-2732273)
chr6 (26-95)||(769185-769254)
chr6 (23-96)||(30863290-30863363)
[»] chr2 (16 HSPs)
chr2 (23-96)||(5902502-5902575)
chr2 (14-97)||(27237845-27237928)
chr2 (14-55)||(5781704-5781745)
chr2 (144-189)||(27237876-27237921)
chr2 (23-55)||(5826261-5826293)
chr2 (25-73)||(32821855-32821903)
chr2 (23-70)||(1494425-1494472)
chr2 (23-70)||(33256784-33256831)
chr2 (14-97)||(43456659-43456742)
chr2 (23-69)||(30538153-30538199)
chr2 (26-68)||(34652017-34652059)
chr2 (14-59)||(787367-787412)
chr2 (145-182)||(5902539-5902576)
chr2 (23-88)||(14316106-14316171)
chr2 (25-70)||(18884913-18884958)
chr2 (23-87)||(41293124-41293189)
[»] chr8 (7 HSPs)
chr8 (23-96)||(39881674-39881747)
chr8 (23-70)||(4055595-4055642)
chr8 (23-70)||(7878506-7878552)
chr8 (23-70)||(11569436-11569483)
chr8 (43-97)||(10488527-10488581)
chr8 (26-71)||(9835878-9835923)
chr8 (144-189)||(11569440-11569485)
[»] chr3 (14 HSPs)
chr3 (23-90)||(24624254-24624321)
chr3 (14-97)||(43115091-43115174)
chr3 (26-70)||(20192585-20192629)
chr3 (23-68)||(31010446-31010491)
chr3 (144-182)||(24624252-24624290)
chr3 (42-96)||(25459583-25459637)
chr3 (14-72)||(27290878-27290936)
chr3 (25-95)||(45541617-45541687)
chr3 (26-96)||(49465890-49465959)
chr3 (594-640)||(53923644-53923690)
chr3 (595-632)||(26603837-26603874)
chr3 (144-189)||(31010444-31010489)
chr3 (26-87)||(39602172-39602233)
chr3 (14-59)||(50952368-50952413)
[»] chr1 (16 HSPs)
chr1 (16-67)||(45999270-45999321)
chr1 (24-97)||(15581299-15581372)
chr1 (23-70)||(30815632-30815679)
chr1 (23-96)||(6231769-6231842)
chr1 (42-95)||(23373267-23373320)
chr1 (20-73)||(27145962-27146015)
chr1 (144-189)||(45999271-45999316)
chr1 (24-96)||(43338161-43338233)
chr1 (23-90)||(45327624-45327691)
chr1 (23-57)||(1565527-1565561)
chr1 (26-60)||(29723536-29723570)
chr1 (23-72)||(11639393-11639442)
chr1 (24-69)||(17628644-17628689)
chr1 (144-189)||(30815636-30815681)
chr1 (26-59)||(37811899-37811932)
chr1 (23-92)||(38170647-38170716)
[»] chr5 (8 HSPs)
chr5 (24-96)||(8651305-8651378)
chr5 (29-93)||(11457148-11457212)
chr5 (14-72)||(1899189-1899246)
chr5 (28-70)||(11667189-11667231)
chr5 (25-95)||(11700332-11700402)
chr5 (27-89)||(13781835-13781897)
chr5 (14-96)||(32172688-32172770)
chr5 (23-92)||(13264062-13264131)
[»] chr4 (9 HSPs)
chr4 (36-97)||(3639120-3639181)
chr4 (14-95)||(29467578-29467659)
chr4 (23-93)||(4798522-4798592)
chr4 (26-90)||(41097215-41097279)
chr4 (14-97)||(21157803-21157886)
chr4 (595-645)||(31337263-31337314)
chr4 (26-96)||(11264348-11264418)
chr4 (144-189)||(29467607-29467652)
chr4 (650-683)||(31337286-31337319)
[»] chr7 (15 HSPs)
chr7 (23-70)||(12834941-12834988)
chr7 (23-97)||(36598308-36598382)
chr7 (27-96)||(38496459-38496528)
chr7 (14-87)||(48157082-48157155)
chr7 (144-188)||(12834946-12834990)
chr7 (28-88)||(27626084-27626144)
chr7 (14-73)||(12234865-12234924)
chr7 (25-96)||(20553149-20553220)
chr7 (26-97)||(30751566-30751637)
chr7 (23-70)||(42281493-42281540)
chr7 (42-96)||(10079292-10079346)
chr7 (36-73)||(2176937-2176974)
chr7 (23-96)||(9038156-9038228)
chr7 (23-96)||(36537952-36538025)
chr7 (144-189)||(42281497-42281542)
[»] scaffold0159 (1 HSPs)
scaffold0159 (14-55)||(27036-27077)
[»] scaffold0053 (1 HSPs)
scaffold0053 (28-70)||(20214-20256)


Alignment Details
Target: chr6 (Bit Score: 604; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 15 - 707
Target Start/End: Complemental strand, 3775162 - 3774474
Alignment:
Q  15 tggacatcagctgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaagtgtttatgtacatgtcataaacactt 114  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3775162 tggacataagctgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaatagtctcacaagtgtttatgtacatgtcataaacactt 3775063  T
Q  115 atttgtacataagccgaaaacagtttatgtaagctgaaaacagtttatgtacatgtcacaagctgtttctataagaatagtctcacaagtgtttatgtcc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3775062 atttgtacataagccgaaaacagtttatgtaagctgaaaacagtttatgtacatgtcacaagctgtttctataagaatagtctcacaagtgtttatgtcc 3774963  T
Q  215 acagataatcagtactatagcatttaaccatgttaactgactatagacaaaagtacaaggaacataaaaaccaaaccagaaagtatgacaaattgagcta 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3774962 acagataatcagtactatagcatttaaccatgttaactgactatagacaaaagtacaaggaacataaaaaccaaaccagaaagtatgacaaattgagcta 3774863  T
Q  315 aaacgtgaaatatgacagtccttactccttaaatctgttctttctttatatagaaaaaccaagatacaaaacccagaagctcaatagagtaagatttttt 414  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3774862 aaacttgaaatatgacagtccttactccttaaatctgttctttctttatatagaaaaaccaagatacaaaacccagaagctcaatagagtaagatttttt 3774763  T
Q  415 cacagtacaaaagagaatatattcagaatcagatatagaaaaggaaactttagattgaactatgagcatgttaaacacaatcaataatctggtctcaaaa 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3774762 cacagtacaaaagagaatatattcagaatcagatatagaaaaggaaactttagattgaactatgagcatgttaaacacaatcaataatctggtctcaaaa 3774663  T
Q  515 tttacnnnnnnntattgacattataaactctatttactactcaggtctcaaatttaagcnnnnnnnntaataataaatagtcaaacaaagttgatgtatt 614  Q
    |||||       | |||||| ||||||||||||||||||||||||||||||||||||||         || || ||||||||||||||||||||||||||    
T  3774662 tttacaaaaaaatcttgacactataaactctatttactactcaggtctcaaatttaagcaaaaa----aaaaagaaatagtcaaacaaagttgatgtatt 3774567  T
Q  615 ggttaaaaatttgtaccagacacatcaacttctgattaaaaatttgaacaagatacatcaactttattttgcttatattcaatacgacgatat 707  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3774566 ggttaaaaatttgcaccagacacatcaacttctgattaaaaatttgaacgagatacatcaactttattttgcttatattcaatacgacgatat 3774474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 143
Target Start/End: Complemental strand, 3775199 - 3775137
Alignment:
Q  80 tctcacaagtgtttatgtacatgtcataaacacttatttgtacataagccgaaaacagtttatg 143  Q
    |||||||||||||||||| ||||||| ||||||||||||| |||||||| ||||||||||||||    
T  3775199 tctcacaagtgtttatgtgcatgtca-aaacacttatttggacataagctgaaaacagtttatg 3775137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 32976023 - 32976088
Alignment:
Q  24 gctgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaagt 89  Q
    ||||||||||| ||||| | |||||||||||||||||||||||||||||| || | ||||||||||    
T  32976023 gctgaaaacagcttatggaaatgtcataagctgtttctataagctcttccaaacagtctcacaagt 32976088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 4420678 - 4420735
Alignment:
Q  14 atggacatcagctgaaaacagtttatgcacatgtcataagctgtttctataagctctt 71  Q
    ||||| || |||||||||||| ||||| |||||||||||  |||||||||||||||||    
T  4420678 atggaaataagctgaaaacagcttatgaacatgtcataatttgtttctataagctctt 4420735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 34538244 - 34538172
Alignment:
Q  23 agctgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaagtgtttat 95  Q
    ||||||||| |||||||| ||||||| |||||||||| |||||| |||  | |||| ||||||||||| ||||    
T  34538244 agctgaaaatagtttatggacatgtcgtaagctgtttttataagatctctcaaatagtctcacaagtgcttat 34538172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 34939779 - 34939835
Alignment:
Q  14 atggacatcagctgaaaacagtttatgcacatgtcataagctgtttctataagctct 70  Q
    ||||| || ||||||||||| |||||| |||||||||||||||||||  ||||||||    
T  34939779 atggaaataagctgaaaacaatttatggacatgtcataagctgtttccgtaagctct 34939835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 8420204 - 8420149
Alignment:
Q  42 acatgtcataagctgtttctataagctcttccgaataatctcacaagtgtttatgt 97  Q
    |||||||||||||| ||||||||||||||  | || | ||||||||||||||||||    
T  8420204 acatgtcataagctatttctataagctctcactaacagtctcacaagtgtttatgt 8420149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 95
Target Start/End: Original strand, 32917254 - 32917313
Alignment:
Q  36 ttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaagtgtttat 95  Q
    ||||| |||||||||||| |||||| ||||||||| || || | ||||||||||||||||    
T  32917254 ttatggacatgtcataagttgtttccataagctctcccaaacagtctcacaagtgtttat 32917313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 283139 - 283213
Alignment:
Q  23 agctgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaagtgtttatgt 97  Q
    ||||||||| |||||||| |||||||||||||||||| |||| | || ||| || | | ||||||||| ||||||    
T  283139 agctgaaaatagtttatggacatgtcataagctgtttttatacgttcctccaaacagtttcacaagtgcttatgt 283213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 2455857 - 2455927
Alignment:
Q  26 tgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaagtgtttatg 96  Q
    |||||| ||||||||  ||||||||||| |||||| |||||||||||  || |||||| |||||| |||||    
T  2455857 tgaaaatagtttatgggcatgtcataagttgtttccataagctcttctaaacaatctcgcaagtgcttatg 2455927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 2732273 - 2732199
Alignment:
Q  23 agctgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaagtgtttatgt 97  Q
    ||||||||||| |||||| |||  |||| ||||||||| ||||||| |||| || | ||||||||||| ||||||    
T  2732273 agctgaaaacaatttatggacagatcattagctgtttccataagcttttccaaacagtctcacaagtgcttatgt 2732199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 769185 - 769254
Alignment:
Q  26 tgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaagtgtttat 95  Q
    ||||||||| ||||| |||||||||||| |||||  ||||| || ||| || | ||||||||||||||||    
T  769185 tgaaaacagcttatgaacatgtcataagatgttttcataagttcatccaaacagtctcacaagtgtttat 769254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 30863290 - 30863363
Alignment:
Q  23 agctgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaagtgtttatg 96  Q
    |||||||||||  ||||| |||||||||||| |||||  ||||||||| || || | ||| |||||||||||||    
T  30863290 agctgaaaacaacttatgtacatgtcataagttgttttcataagctctaccaaagagtctaacaagtgtttatg 30863363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 7e-17; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 5902575 - 5902502
Alignment:
Q  23 agctgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaagtgtttatg 96  Q
    |||||||||||||||||| ||||||||||||||||||  ||||| |||||| || | |||||||||||||||||    
T  5902575 agctgaaaacagtttatgaacatgtcataagctgttttcataagttcttccaaacagtctcacaagtgtttatg 5902502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 27237928 - 27237845
Alignment:
Q  14 atggacatcagctgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaagtgtttatgt 97  Q
    ||||| || |||| ||||||| ||||| ||||||||||||||||||||||||| ||| || || | | |||| |||||||||||    
T  27237928 atggaaataagctaaaaacagcttatgtacatgtcataagctgtttctataagttctaccaaacagtttcactagtgtttatgt 27237845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 5781704 - 5781745
Alignment:
Q  14 atggacatcagctgaaaacagtttatgcacatgtcataagct 55  Q
    ||||| || |||||||||||||||||||||||||||||||||    
T  5781704 atggaaataagctgaaaacagtttatgcacatgtcataagct 5781745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 27237921 - 27237876
Alignment:
Q  144 taagctgaaaacagtttatgtacatgtcacaagctgtttctataag 189  Q
    |||||| ||||||| |||||||||||||| ||||||||||||||||    
T  27237921 taagctaaaaacagcttatgtacatgtcataagctgtttctataag 27237876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 5826261 - 5826293
Alignment:
Q  23 agctgaaaacagtttatgcacatgtcataagct 55  Q
    |||||||||||||||||||||||||||||||||    
T  5826261 agctgaaaacagtttatgcacatgtcataagct 5826293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 32821855 - 32821903
Alignment:
Q  25 ctgaaaacagtttatgcacatgtcataagctgtttctataagctcttcc 73  Q
    |||||||||| ||||| |||||||||||| ||||||||||| |||||||    
T  32821855 ctgaaaacagcttatggacatgtcataagttgtttctataaactcttcc 32821903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 1494472 - 1494425
Alignment:
Q  23 agctgaaaacagtttatgcacatgtcataagctgtttctataagctct 70  Q
    |||| ||||||||||||| ||||||||||||||||||  |||||||||    
T  1494472 agctaaaaacagtttatggacatgtcataagctgttttcataagctct 1494425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 33256784 - 33256831
Alignment:
Q  23 agctgaaaacagtttatgcacatgtcataagctgtttctataagctct 70  Q
    |||||| ||||||||||| ||||||||||||||||||  |||||||||    
T  33256784 agctgagaacagtttatgaacatgtcataagctgttttcataagctct 33256831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 43456742 - 43456659
Alignment:
Q  14 atggacatcagctgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaagtgtttatgt 97  Q
    ||||| || |||||||||||||||||| ||||||||| || |||||  | |||||||| | || | ||| ||||||||||||||    
T  43456742 atggaaataagctgaaaacagtttatggacatgtcatgagttgttttcacaagctctttcaaacagtcttacaagtgtttatgt 43456659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 30538199 - 30538153
Alignment:
Q  23 agctgaaaacagtttatgcacatgtcataagctgtttctataagctc 69  Q
    |||||||||||  ||||| |||||||||||| |||||||||||||||    
T  30538199 agctgaaaacaacttatggacatgtcataagttgtttctataagctc 30538153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 34652059 - 34652017
Alignment:
Q  26 tgaaaacagtttatgcacatgtcataagctgtttctataagct 68  Q
    ||||||||| ||||| |||||||||||| ||||||||||||||    
T  34652059 tgaaaacagcttatggacatgtcataagttgtttctataagct 34652017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 787367 - 787412
Alignment:
Q  14 atggacatcagctgaaaacagtttatgcacatgtcataagctgttt 59  Q
    ||||| || |||||||||||| ||||| ||||||||||||||||||    
T  787367 atggagataagctgaaaacagcttatggacatgtcataagctgttt 787412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 182
Target Start/End: Complemental strand, 5902576 - 5902539
Alignment:
Q  145 aagctgaaaacagtttatgtacatgtcacaagctgttt 182  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  5902576 aagctgaaaacagtttatgaacatgtcataagctgttt 5902539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 14316171 - 14316106
Alignment:
Q  23 agctgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaag 88  Q
    |||||||||||| |||| || |||||||||| |||||| ||||||||| |  |||| |||||||||    
T  14316171 agctgaaaacagcttatacatatgtcataagttgtttccataagctctccaaaatagtctcacaag 14316106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 18884913 - 18884958
Alignment:
Q  25 ctgaaaacagtttatgcacatgtcataagctgtttctataagctct 70  Q
    |||||||||| | ||| | |||||||||||||||||||||||||||    
T  18884913 ctgaaaacagctaatggaaatgtcataagctgtttctataagctct 18884958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 41293189 - 41293124
Alignment:
Q  23 agctgaaaacagtttatgc-acatgtcataagctgtttctataagctcttccgaataatctcacaa 87  Q
    |||||||||||| |||||| | |||||||||||||||| |||||| ||| || |||| ||||||||    
T  41293189 agctgaaaacagcttatgcgaaatgtcataagctgtttttataagttctcccaaatagtctcacaa 41293124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 39881747 - 39881674
Alignment:
Q  23 agctgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaagtgtttatg 96  Q
    |||||||||| ||||||| |||||||||||||| |||  | |||||||||| || |||||||||||||||||||    
T  39881747 agctgaaaactgtttatgaacatgtcataagctattttcacaagctcttccaaacaatctcacaagtgtttatg 39881674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 4055642 - 4055595
Alignment:
Q  23 agctgaaaacagtttatgcacatgtcataagctgtttctataagctct 70  Q
    |||||||||||||||||| |||||||||||| | ||||||||| ||||    
T  4055642 agctgaaaacagtttatggacatgtcataagttatttctataaactct 4055595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 7878552 - 7878506
Alignment:
Q  23 agctgaaaacagtttatgcacatgtcataagctgtttctataagctct 70  Q
    |||||||||||||||||  ||||||||||||||| |||||||||||||    
T  7878552 agctgaaaacagtttatagacatgtcataagctg-ttctataagctct 7878506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 11569483 - 11569436
Alignment:
Q  23 agctgaaaacagtttatgcacatgtcataagctgtttctataagctct 70  Q
    |||||||||||  ||||| ||||||||||||||||||| |||||||||    
T  11569483 agctgaaaacaacttatgtacatgtcataagctgtttccataagctct 11569436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 10488527 - 10488581
Alignment:
Q  43 catgtcataagctgtttctataagctcttccgaataatctcacaagtgtttatgt 97  Q
    |||| |||||||||||||| || ||||||||||| | ||||||| ||||||||||    
T  10488527 catgccataagctgtttctgtatgctcttccgaacagtctcacatgtgtttatgt 10488581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 9835923 - 9835878
Alignment:
Q  26 tgaaaacagtttatgcacatgtcataagctgtttctataagctctt 71  Q
    ||||||||| ||||| ||||||||||||||||||  ||||||||||    
T  9835923 tgaaaacagcttatgaacatgtcataagctgtttacataagctctt 9835878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 11569485 - 11569440
Alignment:
Q  144 taagctgaaaacagtttatgtacatgtcacaagctgtttctataag 189  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||    
T  11569485 taagctgaaaacaacttatgtacatgtcataagctgtttccataag 11569440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 24624254 - 24624321
Alignment:
Q  23 agctgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaagtg 90  Q
    |||||||||||||||||| ||||||||||||||||||  |||||||||||| || | ||| |||||||    
T  24624254 agctgaaaacagtttatggacatgtcataagctgttttcataagctcttccaaacagtcttacaagtg 24624321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 97
Target Start/End: Original strand, 43115091 - 43115174
Alignment:
Q  14 atggacatcagctgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaagtgtttatgt 97  Q
    ||||| || |||||||||||  ||||| |||||||||||| |||||| |||| ||||||| || ||||||||||||| ||||||    
T  43115091 atggaaataagctgaaaacaagttatggacatgtcataagttgtttccataaactcttccaaacaatctcacaagtgattatgt 43115174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 20192629 - 20192585
Alignment:
Q  26 tgaaaacagtttatgcacatgtcataagctgtttctataagctct 70  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||    
T  20192629 tgaaaacagcttatggacatgtcataagctgtttctataagctct 20192585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 31010446 - 31010491
Alignment:
Q  23 agctgaaaacagtttatgcacatgtcataagctgtttctataagct 68  Q
    |||||||||||| ||||| |||||||||||| ||||||||||||||    
T  31010446 agctgaaaacagcttatggacatgtcataagttgtttctataagct 31010491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 182
Target Start/End: Original strand, 24624252 - 24624290
Alignment:
Q  144 taagctgaaaacagtttatgtacatgtcacaagctgttt 182  Q
    |||||||||||||||||||| |||||||| |||||||||    
T  24624252 taagctgaaaacagtttatggacatgtcataagctgttt 24624290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 25459637 - 25459583
Alignment:
Q  42 acatgtcataagctgtttctataagctcttccgaataatctcacaagtgtttatg 96  Q
    ||||| ||||| |||||||| ||||||||||| || ||||||||||||| |||||    
T  25459637 acatgacataatctgtttctctaagctcttccaaacaatctcacaagtgcttatg 25459583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 27290936 - 27290878
Alignment:
Q  14 atggacatcagctgaaaacagtttatgcacatgtcataagctgtttctataagctcttc 72  Q
    ||||| || |||||||||||| |||||  |||||||||||||||||  |||||||||||    
T  27290936 atggaaataagctgaaaacagcttatgggcatgtcataagctgttttcataagctcttc 27290878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 45541617 - 45541687
Alignment:
Q  25 ctgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaagtgtttat 95  Q
    |||||||||| ||||| ||||||||||||||||||  ||||| |||||  || | ||| ||||||||||||    
T  45541617 ctgaaaacagcttatgaacatgtcataagctgttttcataagttcttctaaacagtcttacaagtgtttat 45541687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 49465959 - 49465890
Alignment:
Q  26 tgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaagtgtttatg 96  Q
    |||||| |||| ||| |||||||||||| ||||||||||||||| ||  || | |||||||||||||||||    
T  49465959 tgaaaatagttcatggacatgtcataagttgtttctataagctc-tcacaaaactctcacaagtgtttatg 49465890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 594 - 640
Target Start/End: Original strand, 53923644 - 53923690
Alignment:
Q  594 gtcaaacaaagttgatgtattggttaaaaatttgtaccagacacatc 640  Q
    ||||||||||||||||||| |||||||||||| | |||||| |||||    
T  53923644 gtcaaacaaagttgatgtagtggttaaaaattcgaaccagatacatc 53923690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 595 - 632
Target Start/End: Original strand, 26603837 - 26603874
Alignment:
Q  595 tcaaacaaagttgatgtattggttaaaaatttgtacca 632  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  26603837 tcaaacaaagttgatgtattggttaaaaacttgaacca 26603874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 31010444 - 31010489
Alignment:
Q  144 taagctgaaaacagtttatgtacatgtcacaagctgtttctataag 189  Q
    |||||||||||||| ||||| |||||||| ||| ||||||||||||    
T  31010444 taagctgaaaacagcttatggacatgtcataagttgtttctataag 31010489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 39602233 - 39602172
Alignment:
Q  26 tgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaa 87  Q
    |||||||| |||||| |||||||||||||||| |  |||||||||||| ||||  |||||||    
T  39602233 tgaaaacaatttatgaacatgtcataagctgtcttcataagctcttccaaatagcctcacaa 39602172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 50952368 - 50952413
Alignment:
Q  14 atggacatcagctgaaaacagtttatgcacatgtcataagctgttt 59  Q
    ||||| || |||| ||||||||||||| ||||||||||||||||||    
T  50952368 atggaaataagcttaaaacagtttatgaacatgtcataagctgttt 50952413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 45999321 - 45999270
Alignment:
Q  16 ggacatcagctgaaaacagtttatgcacatgtcataagctgtttctataagc 67  Q
    |||||| |||||||||||||||||| ||||||||||||||| ||||||||||    
T  45999321 ggacataagctgaaaacagtttatgaacatgtcataagctgcttctataagc 45999270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 15581299 - 15581372
Alignment:
Q  24 gctgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaagtgtttatgt 97  Q
    ||||||||||| ||||  |||||||||||| |||||| || ||||||||| || ||||||||||||| ||||||    
T  15581299 gctgaaaacagcttatagacatgtcataagttgtttccattagctcttccaaacaatctcacaagtgcttatgt 15581372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 30815679 - 30815632
Alignment:
Q  23 agctgaaaacagtttatgcacatgtcataagctgtttctataagctct 70  Q
    ||||||||||| |||||| |||||||||||||||||| ||||||||||    
T  30815679 agctgaaaacattttatgaacatgtcataagctgtttatataagctct 30815632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 6231842 - 6231769
Alignment:
Q  23 agctgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaagtgtttatg 96  Q
    |||||||||||||||||| ||||||||| || |||||| || |||| | | ||| |||||||||| ||||||||    
T  6231842 agctgaaaacagtttatggacatgtcattagttgtttccatgagctatccagaacaatctcacaaatgtttatg 6231769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 23373320 - 23373267
Alignment:
Q  42 acatgtcataagctgtttctataagctcttccgaataatctcacaagtgtttat 95  Q
    |||||||||||| |||||||||||||||| || || ||||||||||||| ||||    
T  23373320 acatgtcataagttgtttctataagctctcccaaacaatctcacaagtgcttat 23373267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 27145962 - 27146015
Alignment:
Q  20 atcagctgaaaacagtttatgcacatgtcataagctgtttctataagctcttcc 73  Q
    |||||||||||| |  ||||| ||||||||||||||||||| ||||||||||||    
T  27145962 atcagctgaaaataacttatggacatgtcataagctgtttccataagctcttcc 27146015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 45999316 - 45999271
Alignment:
Q  144 taagctgaaaacagtttatgtacatgtcacaagctgtttctataag 189  Q
    |||||||||||||||||||| |||||||| |||||| |||||||||    
T  45999316 taagctgaaaacagtttatgaacatgtcataagctgcttctataag 45999271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 43338161 - 43338233
Alignment:
Q  24 gctgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaagtgtttatg 96  Q
    |||||||| || ||||| ||||||||||||||||||| ||||| |||||  |||||||| |||| || |||||    
T  43338161 gctgaaaatagattatgaacatgtcataagctgtttccataagttcttctaaataatcttacaaatgcttatg 43338233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 45327624 - 45327691
Alignment:
Q  23 agctgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaagtg 90  Q
    ||||||||||| |||||| |||||||||||| |||||| ||||||||  || | || |||||||||||    
T  45327624 agctgaaaacaatttatggacatgtcataagttgtttccataagctcccccaactagtctcacaagtg 45327691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 57
Target Start/End: Complemental strand, 1565561 - 1565527
Alignment:
Q  23 agctgaaaacagtttatgcacatgtcataagctgt 57  Q
    |||||||||||| ||||||||||||||||||||||    
T  1565561 agctgaaaacagcttatgcacatgtcataagctgt 1565527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 60
Target Start/End: Original strand, 29723536 - 29723570
Alignment:
Q  26 tgaaaacagtttatgcacatgtcataagctgtttc 60  Q
    ||||||||||||||| |||||||||||||||||||    
T  29723536 tgaaaacagtttatggacatgtcataagctgtttc 29723570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 11639442 - 11639393
Alignment:
Q  23 agctgaaaacagtttatgcacatgtcataagctgtttctataagctcttc 72  Q
    |||| ||||||| ||||| ||||||||||||||||||  |||||||||||    
T  11639442 agctaaaaacagcttatggacatgtcataagctgttttcataagctcttc 11639393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 17628644 - 17628689
Alignment:
Q  24 gctgaaaacagtttatgcacatgtcataagctgtttctataagctc 69  Q
    ||||||||||| ||||| |||||||||||| |||||| ||||||||    
T  17628644 gctgaaaacagcttatggacatgtcataagttgtttccataagctc 17628689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 30815681 - 30815636
Alignment:
Q  144 taagctgaaaacagtttatgtacatgtcacaagctgtttctataag 189  Q
    ||||||||||||| |||||| |||||||| ||||||||| ||||||    
T  30815681 taagctgaaaacattttatgaacatgtcataagctgtttatataag 30815636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 37811899 - 37811932
Alignment:
Q  26 tgaaaacagtttatgcacatgtcataagctgttt 59  Q
    ||||||||||||||| ||||||||||||||||||    
T  37811899 tgaaaacagtttatgaacatgtcataagctgttt 37811932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 38170716 - 38170647
Alignment:
Q  23 agctgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaagtgtt 92  Q
    |||||||||||  ||||| ||||||||||||||||||  ||||||||| || |  | |||||||||||||    
T  38170716 agctgaaaacaacttatgaacatgtcataagctgttttcataagctctcccaagcagtctcacaagtgtt 38170647  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 8651378 - 8651305
Alignment:
Q  24 gctgaaaacagtttatgcacatgtc-ataagctgtttctataagctcttccgaataatctcacaagtgtttatg 96  Q
    ||||||||||  ||||| ||||||  |||||||||||| ||||||||||||||||| |||||| ||||||||||    
T  8651378 gctgaaaacaacttatggacatgtttataagctgtttccataagctcttccgaatactctcacgagtgtttatg 8651305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 11457148 - 11457212
Alignment:
Q  29 aaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaagtgttt 93  Q
    |||||| ||||| |||||||||||| |||||| |||||||||||  || | ||||||||||||||    
T  11457148 aaacagcttatggacatgtcataagttgtttccataagctcttcaaaacagtctcacaagtgttt 11457212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 1899189 - 1899246
Alignment:
Q  14 atggacatcagctgaaaacagtttatgcacatgtcataagctgtttctataagctcttc 72  Q
    ||||| || |||||||||||  |||||||||||||||||||||||| | ||||||||||    
T  1899189 atggaaataagctgaaaacaacttatgcacatgtcataagctgttt-tgtaagctcttc 1899246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 11667189 - 11667231
Alignment:
Q  28 aaaacagtttatgcacatgtcataagctgtttctataagctct 70  Q
    ||||||||||||| ||||||||||| ||||||||| |||||||    
T  11667189 aaaacagtttatggacatgtcataatctgtttctacaagctct 11667231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 11700402 - 11700332
Alignment:
Q  25 ctgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaagtgtttat 95  Q
    |||||||||| ||||| |||||||||||| |||||| |||| |||| |  |||| ||||||||||| ||||    
T  11700402 ctgaaaacagcttatggacatgtcataagttgtttccataaactctcctcaatagtctcacaagtgcttat 11700332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 13781897 - 13781835
Alignment:
Q  27 gaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaagt 89  Q
    |||||||  |||||||||||||||||||| |||||| ||||||| || || | ||||||||||    
T  13781897 gaaaacaacttatgcacatgtcataagctatttctacaagctctaccaaacagtctcacaagt 13781835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 32172688 - 32172770
Alignment:
Q  14 atggacatcagctgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaagtgtttatg 96  Q
    ||||| || |||||||||  | ||||| |||||||||||| |||||| ||||||||| || ||  |||||||||||| |||||    
T  32172688 atggaaataagctgaaaatggcttatggacatgtcataagttgtttccataagctctcccaaactatctcacaagtgcttatg 32172770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 13264131 - 13264062
Alignment:
Q  23 agctgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaagtgtt 92  Q
    |||||||||||| ||||| | ||| ||||||||||||| |||| ||||||| || | |||| ||||||||    
T  13264131 agctgaaaacagcttatgaatatggcataagctgtttccataaactcttccaaacagtctcgcaagtgtt 13264062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 3639181 - 3639120
Alignment:
Q  36 ttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaagtgtttatgt 97  Q
    ||||| || ||||||||||||||||||| ||||||||| |||||||||||| ||| ||||||    
T  3639181 ttatggacttgtcataagctgtttctatcagctcttccaaataatctcacaggtgcttatgt 3639120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 29467659 - 29467578
Alignment:
Q  14 atggacatcagctgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaagtgtttat 95  Q
    ||||| || |||||||||||| ||||| ||||||||||||| ||||||||||||| | || |  |||||||||||| |||||    
T  29467659 atggaaataagctgaaaacagcttatggacatgtcataagccgtttctataagctttaccaagcaatctcacaagtatttat 29467578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 4798592 - 4798522
Alignment:
Q  23 agctgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaagtgttt 93  Q
    |||| ||||||| ||||| |||||||| |||| ||||| |||||||||||| || | ||||||||||||||    
T  4798592 agctcaaaacagcttatgtacatgtcagaagccgtttccataagctcttcctaacagtctcacaagtgttt 4798522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 41097279 - 41097215
Alignment:
Q  26 tgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaagtg 90  Q
    |||||| || ||||| ||||||||| || |||||||||||||||| ||||| | |||||||||||    
T  41097279 tgaaaatagcttatggacatgtcattagttgtttctataagctctcccgaacagtctcacaagtg 41097215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 97
Target Start/End: Original strand, 21157803 - 21157886
Alignment:
Q  14 atggacatcagctgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaagtgtttatgt 97  Q
    ||||| || |||| ||||||| || || | |||||||||||||||||| ||||||||||| || | ||| ||||||| ||||||    
T  21157803 atggaaataagctaaaaacagcttttgtaaatgtcataagctgtttctgtaagctcttccaaacagtcttacaagtgcttatgt 21157886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 595 - 645
Target Start/End: Original strand, 31337263 - 31337314
Alignment:
Q  595 tcaaacaaagttgatgtattg-gttaaaaatttgtaccagacacatcaactt 645  Q
    ||||||||||||||||||||  |||||||||||| |||||| ||||||||||    
T  31337263 tcaaacaaagttgatgtatttagttaaaaatttgaaccagatacatcaactt 31337314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 11264348 - 11264418
Alignment:
Q  26 tgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaagtgtttatg 96  Q
    ||||||||||||||| |||||||||||| || ||||||| ||||| || || | |||||||  ||||||||    
T  11264348 tgaaaacagtttatggacatgtcataagttgattctatatgctctcccaaacagtctcacagatgtttatg 11264418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 29467652 - 29467607
Alignment:
Q  144 taagctgaaaacagtttatgtacatgtcacaagctgtttctataag 189  Q
    |||||||||||||| ||||| |||||||| |||| |||||||||||    
T  29467652 taagctgaaaacagcttatggacatgtcataagccgtttctataag 29467607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 683
Target Start/End: Original strand, 31337286 - 31337319
Alignment:
Q  650 ttaaaaatttgaacaagatacatcaactttattt 683  Q
    |||||||||||||| |||||||||||||||||||    
T  31337286 ttaaaaatttgaaccagatacatcaactttattt 31337319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 12834988 - 12834941
Alignment:
Q  23 agctgaaaacagtttatgcacatgtcataagctgtttctataagctct 70  Q
    |||||||||||||||||| ||||||||||||||||||| |||| ||||    
T  12834988 agctgaaaacagtttatggacatgtcataagctgtttccataatctct 12834941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 36598382 - 36598308
Alignment:
Q  23 agctgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaagtgtttatgt 97  Q
    |||||||||||| ||||| |||||||||||| |||||| |||||||||  | || |||||||||| || ||||||    
T  36598382 agctgaaaacagcttatgaacatgtcataagatgtttccataagctctctcaaacaatctcacaattgcttatgt 36598308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 38496528 - 38496459
Alignment:
Q  27 gaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaagtgtttatg 96  Q
    |||||| ||||||  |||||| |||||||||||| ||||||| |||| || |||| ||||||||||||||    
T  38496528 gaaaactgtttattgacatgttataagctgtttccataagcttttcccaacaatcacacaagtgtttatg 38496459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 48157155 - 48157082
Alignment:
Q  14 atggacatcagctgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaa 87  Q
    ||||| || |||||||||||| ||||| ||||| |||||| |||||||||||||||| || || | ||||||||    
T  48157155 atggaaataagctgaaaacagcttatggacatggcataagttgtttctataagctctcccaaacagtctcacaa 48157082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 12834990 - 12834946
Alignment:
Q  144 taagctgaaaacagtttatgtacatgtcacaagctgtttctataa 188  Q
    |||||||||||||||||||| |||||||| |||||||||| ||||    
T  12834990 taagctgaaaacagtttatggacatgtcataagctgtttccataa 12834946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 27626144 - 27626084
Alignment:
Q  28 aaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaag 88  Q
    ||||||||||||| ||||||||||||||||||| ||||||| |  | || |||||||||||    
T  27626144 aaaacagtttatggacatgtcataagctgtttccataagctttctcaaacaatctcacaag 27626084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 12234924 - 12234865
Alignment:
Q  14 atggacatcagctgaaaacagtttatgcacatgtcataagctgtttctataagctcttcc 73  Q
    ||||| || |||||||||||| ||||  |||||||||||| |||||||||||||| ||||    
T  12234924 atggaaataagctgaaaacagcttatagacatgtcataagttgtttctataagctattcc 12234865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 20553149 - 20553220
Alignment:
Q  25 ctgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaagtgtttatg 96  Q
    |||||||||  ||||| ||||||| ||||||||||| ||||||||| | ||| | ||||||||||| |||||    
T  20553149 ctgaaaacaacttatgaacatgtcgtaagctgtttccataagctctcctgaacagtctcacaagtgcttatg 20553220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 30751566 - 30751637
Alignment:
Q  26 tgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaagtgtttatgt 97  Q
    ||||||||||||||| |||||  |||| ||||||||||||||||| || || | || |||||||| ||||||    
T  30751566 tgaaaacagtttatggacatgctataaactgtttctataagctctcccaaacagtcgcacaagtgcttatgt 30751637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 42281540 - 42281493
Alignment:
Q  23 agctgaaaacagtttatgcacatgtcataagctgtttctataagctct 70  Q
    |||||||||||  ||||  |||||||||||||||||||||||||||||    
T  42281540 agctgaaaacaaattatttacatgtcataagctgtttctataagctct 42281493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 10079346 - 10079292
Alignment:
Q  42 acatgtcataagctgtttctataagctcttccgaataatctcacaagtgtttatg 96  Q
    ||||||||| ||||||||||||||||||| || || || |||| |||||||||||    
T  10079346 acatgtcatcagctgtttctataagctctcccaaacaacctcataagtgtttatg 10079292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 73
Target Start/End: Original strand, 2176937 - 2176974
Alignment:
Q  36 ttatgcacatgtcataagctgtttctataagctcttcc 73  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  2176937 ttatgcacatgccataagctgtttctataagttcttcc 2176974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 9038156 - 9038228
Alignment:
Q  23 agctgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaagtgtttatg 96  Q
    ||||||||||| || ||| |||||||||||||||||| |||||| ||||| ||| | ||||| ||||| |||||    
T  9038156 agctgaaaacaatt-atgaacatgtcataagctgtttttataagttcttctgaacattctcataagtgcttatg 9038228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 36537952 - 36538025
Alignment:
Q  23 agctgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaataatctcacaagtgtttatg 96  Q
    |||| ||||||  ||||| |||||||||||| |||||| ||||| |||  | || |||||||||||||||||||    
T  36537952 agctaaaaacaacttatgaacatgtcataagttgtttccataagttctctcaaacaatctcacaagtgtttatg 36538025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 42281542 - 42281497
Alignment:
Q  144 taagctgaaaacagtttatgtacatgtcacaagctgtttctataag 189  Q
    |||||||||||||  |||| ||||||||| ||||||||||||||||    
T  42281542 taagctgaaaacaaattatttacatgtcataagctgtttctataag 42281497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 27036 - 27077
Alignment:
Q  14 atggacatcagctgaaaacagtttatgcacatgtcataagct 55  Q
    ||||| || |||||||||||||||||||||||||||||||||    
T  27036 atggaaataagctgaaaacagtttatgcacatgtcataagct 27077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 20214 - 20256
Alignment:
Q  28 aaaacagtttatgcacatgtcataagctgtttctataagctct 70  Q
    |||||| |||||| ||||| |||||||||||||||||||||||    
T  20214 aaaacaatttatgtacatgccataagctgtttctataagctct 20256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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