View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11690_high_6 (Length: 703)
Name: NF11690_high_6
Description: NF11690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11690_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 51835380 - 51834954
Alignment:
| Q |
1 |
tcaaattagtgatcaaagttggatcgtgtagtgatcaacggtggtcaaagtggcggtcgacaatgtgaaagtaggggttgatgctagtcggagtcgtagt |
100 |
Q |
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| T |
51835380 |
tcaaattagtgatcaaagttggatcgtgtagtgatcaacggtggtcaaagtggcggtcgacggtgtgaaagtagaggttgatgctagtcggagtggtagt |
51835281 |
T |
|
| Q |
101 |
cgacaatgtggaagtagtgtt-------ggtcggagtggtggtcatgatgataatcaatgatggtaaaattgaaggtagataaaaggatgatcaaaggta |
193 |
Q |
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| T |
51835280 |
cgacaatgtgaaagtagtgtttgatgttggtcggagtggtggtcatgatgacaatcagtgatggtaaaattgaaggtggataaaaggatgatcaaaggta |
51835181 |
T |
|
| Q |
194 |
gtcatataatggcagttggtggcggttgacggtggtcggagccatgagtgactagcggtgatcatagtgatgatctagtaagtggtggccataaccataa |
293 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||| |
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| T |
51835180 |
gtcatatagtggcagttggtggcggttgacggtggtcggagccatgagtgactagtagtgatcatagtgatggtctagtaagtggtggcc------ataa |
51835087 |
T |
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| Q |
294 |
tggtagttgaagtagtggttgacaatcattgacaaaaatagaaattataaaacctatcattattgttgagtttttgtagaaagatgttttgaaataaaat |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
51835086 |
tggtagttgaagtagtggttgacaatcattgacaaaaatagaaattataaaacctatcattattgttgagtttttgtagaaagatgttttgaaat--aat |
51834989 |
T |
|
| Q |
394 |
aaaaaatgaactcaatcccattttactcgagcatg |
428 |
Q |
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| T |
51834988 |
aaaaaatgaactcaatcccattttactcgagcatg |
51834954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 469 - 685
Target Start/End: Complemental strand, 51834569 - 51834353
Alignment:
| Q |
469 |
gctcacaaatcacaattatcctaaaccgcctcttacataataacacactcattgataagaaaaatgacacgaattacttgtaattttgttattttaattc |
568 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
51834569 |
gctcacaaatcacaattatcctaaaccgcctcttacataataacacactcattgataagaaaaatgacacgaattacttgtaattttgttattttagttc |
51834470 |
T |
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| Q |
569 |
tacctgaattaaatattcttaactaaaaatatattgattccaatggaactgaattgagattcatcaaagaaaatattgaattcaaactttgagaaaagaa |
668 |
Q |
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| T |
51834469 |
tacctgaattaaatatttttaactaaaaatacattgcttcgaatggaactgaattgagattcatcaaagaaaatattggattcaaactttgagaaaagaa |
51834370 |
T |
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| Q |
669 |
aaagtatagttcagaag |
685 |
Q |
| |
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| T |
51834369 |
aaagtatagttcagaag |
51834353 |
T |
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