View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11690_high_7 (Length: 626)

Name: NF11690_high_7
Description: NF11690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11690_high_7
NF11690_high_7
[»] chr1 (1 HSPs)
chr1 (166-363)||(33339891-33340088)
[»] chr8 (1 HSPs)
chr8 (19-122)||(3021245-3021348)
[»] chr6 (4 HSPs)
chr6 (19-122)||(18365077-18365180)
chr6 (19-122)||(18370341-18370444)
chr6 (19-122)||(18374904-18375007)
chr6 (124-154)||(18328139-18328169)
[»] chr4 (1 HSPs)
chr4 (533-603)||(28182383-28182454)
[»] chr2 (1 HSPs)
chr2 (481-535)||(1726161-1726215)
[»] scaffold0024 (1 HSPs)
scaffold0024 (19-59)||(144410-144450)
[»] chr7 (1 HSPs)
chr7 (23-59)||(18018543-18018579)


Alignment Details
Target: chr1 (Bit Score: 134; Significance: 2e-69; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 166 - 363
Target Start/End: Complemental strand, 33340088 - 33339891
Alignment:
Q  166 gcaacttctatgaggtcattcaagttcagggcgactgttgcttctgctccaagctttcggtcaactgaacgtgcacaaagaagaaaggaggtaaaatttg 265  Q
    ||||||||| ||| ||| ||||||| |||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||    
T  33340088 gcaacttctgtgaagtcgttcaagtccagggcaactgttgcttctgctccaagctttcggtcgactgaacgcgcacaaagaagaaaggaggtaaattttg 33339989  T
Q  266 ttgattaattagctttgtttcaatagggttttcatctcaaattgatcggagcatccccttttgtttgtgtcatagttctattcaaaattagaggaaaa 363  Q
    |||||||| |||||||||||||||||||||||| || |||||||||| | |||||||||||| ||||||| |||||| ||||||||||||||||||||    
T  33339988 ttgattaagtagctttgtttcaatagggttttcttcccaaattgatcagtgcatccccttttatttgtgttatagttttattcaaaattagaggaaaa 33339891  T

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Target: chr8 (Bit Score: 104; Significance: 2e-51; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 3021245 - 3021348
Alignment:
Q  19 ctcttgtggtttgtattctggaacagtatgtccagctccctgtaccaatgcaatcaaataaatattttcagggcttgaaccaggtacatccgaagctaag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3021245 ctcttgtggtttgtattctggaacagtatgtccagctccctgtaccaatgcaatcaaataaatattttcagggcttgaaccaggtacatccgaagctaag 3021344  T
Q  119 actt 122  Q
    ||||    
T  3021345 actt 3021348  T

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Target: chr6 (Bit Score: 104; Significance: 2e-51; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 18365077 - 18365180
Alignment:
Q  19 ctcttgtggtttgtattctggaacagtatgtccagctccctgtaccaatgcaatcaaataaatattttcagggcttgaaccaggtacatccgaagctaag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18365077 ctcttgtggtttgtattctggaacagtatgtccagctccctgtaccaatgcaatcaaataaatattttcagggcttgaaccaggtacatccgaagctaag 18365176  T
Q  119 actt 122  Q
    ||||    
T  18365177 actt 18365180  T

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Target: chr6; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 18370341 - 18370444
Alignment:
Q  19 ctcttgtggtttgtattctggaacagtatgtccagctccctgtaccaatgcaatcaaataaatattttcagggcttgaaccaggtacatccgaagctaag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18370341 ctcttgtggtttgtattctggaacagtatgtccagctccctgtaccaatgcaatcaaataaatattttcagggcttgaaccaggtacatccgaagctaag 18370440  T
Q  119 actt 122  Q
    ||||    
T  18370441 actt 18370444  T

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Target: chr6; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 18374904 - 18375007
Alignment:
Q  19 ctcttgtggtttgtattctggaacagtatgtccagctccctgtaccaatgcaatcaaataaatattttcagggcttgaaccaggtacatccgaagctaag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18374904 ctcttgtggtttgtattctggaacagtatgtccagctccctgtaccaatgcaatcaaataaatattttcagggcttgaaccaggtacatccgaagctaag 18375003  T
Q  119 actt 122  Q
    ||||    
T  18375004 actt 18375007  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 124 - 154
Target Start/End: Complemental strand, 18328169 - 18328139
Alignment:
Q  124 aactttaaatatatcacttatttattttagg 154  Q
    |||||||||||||||||||||||||||||||    
T  18328169 aactttaaatatatcacttatttattttagg 18328139  T

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Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 533 - 603
Target Start/End: Original strand, 28182383 - 28182454
Alignment:
Q  533 taatcattgtttctatatattaagtgtagttgcagtcagcctgtcaccactcacc-aatcatctttctcgac 603  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||| |||||||| || |||||||||||||    
T  28182383 taatcatggtttctatatattaagtgtagttgccgtcagcctgtcatcactcaccaaagcatctttctcgac 28182454  T

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Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 481 - 535
Target Start/End: Original strand, 1726161 - 1726215
Alignment:
Q  481 agtgtcatgcaatgattttgaggtccttgatcctctattgatgctgcagctttaa 535  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  1726161 agtgtcatgcaatgactttgaggtccttgatcctctgttgatgctgcagctttaa 1726215  T

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Target: scaffold0024 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 144410 - 144450
Alignment:
Q  19 ctcttgtggtttgtattctggaacagtatgtccagctccct 59  Q
    |||||||||||||||||| ||||||||||||| ||||||||    
T  144410 ctcttgtggtttgtattccggaacagtatgtctagctccct 144450  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 18018543 - 18018579
Alignment:
Q  23 tgtggtttgtattctggaacagtatgtccagctccct 59  Q
    |||||||| |||||||||||||||||||||| |||||    
T  18018543 tgtggtttatattctggaacagtatgtccagatccct 18018579  T

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