View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11690_high_9 (Length: 521)

Name: NF11690_high_9
Description: NF11690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11690_high_9
NF11690_high_9
[»] chr1 (4 HSPs)
chr1 (1-503)||(30272154-30272657)
chr1 (189-331)||(30270472-30270614)
chr1 (97-278)||(31141945-31142127)
chr1 (155-194)||(34470027-34470066)
[»] scaffold0856 (2 HSPs)
scaffold0856 (96-331)||(4885-5117)
scaffold0856 (1-47)||(4826-4872)
[»] chr8 (2 HSPs)
chr8 (97-194)||(21634803-21634901)
chr8 (106-172)||(5515537-5515604)
[»] chr7 (9 HSPs)
chr7 (97-194)||(32089262-32089360)
chr7 (97-194)||(32096735-32096833)
chr7 (97-194)||(39128489-39128587)
chr7 (97-194)||(39478458-39478556)
chr7 (97-194)||(41706626-41706724)
chr7 (97-194)||(41812162-41812260)
chr7 (97-194)||(32093019-32093117)
chr7 (97-194)||(32087907-32088005)
chr7 (158-198)||(22785386-22785426)
[»] chr6 (4 HSPs)
chr6 (97-194)||(26217231-26217329)
chr6 (117-194)||(7618947-7619025)
chr6 (140-194)||(11187906-11187960)
chr6 (116-184)||(18871931-18872001)
[»] chr3 (5 HSPs)
chr3 (97-194)||(38044518-38044616)
chr3 (97-194)||(48837988-48838086)
chr3 (106-184)||(50152365-50152444)
chr3 (106-184)||(50903997-50904076)
chr3 (106-183)||(50916160-50916242)
[»] chr2 (10 HSPs)
chr2 (332-503)||(30066809-30066980)
chr2 (347-449)||(30250577-30250679)
chr2 (106-176)||(32271350-32271421)
chr2 (327-436)||(30278190-30278299)
chr2 (336-416)||(30185990-30186070)
chr2 (350-450)||(30788920-30789020)
chr2 (338-450)||(30038937-30039049)
chr2 (338-450)||(30056116-30056228)
chr2 (338-450)||(30108415-30108527)
chr2 (338-450)||(30233075-30233187)
[»] chr4 (3 HSPs)
chr4 (141-177)||(7772341-7772377)
chr4 (141-177)||(7777949-7777985)
chr4 (141-177)||(7792741-7792777)
[»] chr5 (1 HSPs)
chr5 (152-183)||(18352651-18352682)


Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Complemental strand, 30272657 - 30272154
Alignment:
Q  1 atgatgaaaaaagaagccaataaccgcagccaacgaagggaatcaaaggaagacgcag-tgaacgaattgatgaaggaagnnnnnnnnnnnnnnnntaat 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||                ||||    
T  30272657 atgatgaaaaaagaagccaataaccgcagccaacgaagggaatcaaaggaagacgcaggtgaacgaattgatgaaggaagaaaaaaaagtaaaaaataat 30272558  T
Q  100 ttgggtcatttcttgatttgtgcgtgtcattcttgcgcatggccatgctaatcttctctgtatcattccaattttatcggatgtcatcgaagggataata 199  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30272557 ttgggtcatttctcgatttgtgcgtgtcattgttgcgcatggccatgctaatcttctctgtatcattccaattttatcggatgtcattgaagggataata 30272458  T
Q  200 gaagaaggtatttccgtgttatataaaagctaaataattgcaaaggttaaccgatgtgggacttatttggtgcgtgcgtgcgaatgtgagacaactagaa 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |    
T  30272457 gaagaaggtatttccgtgttatataaaagctaaataattgcaaaggttaaccgatgtgggacttaattggtgcgtgcgtgcgaacgtgagacaactagga 30272358  T
Q  300 aataaaatacagacatgcactgcacttactaattcagtttcagagttaagtaacagcgaagaggccttaaggtcgcttattaacttgtagtatctggctc 399  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30272357 aataaaatacagacatgcactgcacttaccaattcagtttcagagtcaagtaacagcgaagaggccttaaggtcgcttattaacttgtagtatctggctc 30272258  T
Q  400 ttgcatttgtcaatgtgtgagcgtgtctatctaagcccaacgcccaataacctgatatcagtccaaaagcgtggacgtaatctagaccaaacgaaccaat 499  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30272257 ttgcatctgtcaatgtgtgagcgtgtctatctaagcccaacgcccaataacctgatatcagtccaaaagcgtggacgtaatctagaccaaacgaaccaat 30272158  T
Q  500 gaat 503  Q
    ||||    
T  30272157 gaat 30272154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 189 - 331
Target Start/End: Original strand, 30270472 - 30270614
Alignment:
Q  189 aagggataatagaagaaggtatttccgtgttatataaaagctaaataattgcaaaggttaaccgatgtgggacttatttggtgcgtgcgtgcgaatgtga 288  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |    
T  30270472 aagggatactagaagaaggtatttccgtgttatataaaagctaaataattgcaaaggttaaccgatgtgggacttatttggtgcgtgcgtgcgtacgtta 30270571  T
Q  289 gacaactagaaaataaaatacagacatgcactgcacttactaa 331  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  30270572 gacaactagcaaataaaatacagacatgcactgcacttactaa 30270614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 97 - 278
Target Start/End: Original strand, 31141945 - 31142127
Alignment:
Q  97 aatttgggtcatttcttgatttgtgcgtgtcattcttgcgcatgg-ccatgctaatcttctctgtatcattccaattttatcggatgtcatcgaagggat 195  Q
    |||||||  ||||||| |||||||||||||||| |||||||| || |||||||||||||||||||||| ||||||||||||||||||||  ||||||||     
T  31141945 aatttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggac 31142044  T
Q  196 aatagaagaaggtatttccgtgttatataaaagctaaataattgcaaaggttaaccgatgtgggacttatttggtgcgtgcgt 278  Q
    |||||||||  | |||| || ||||||||||   ||||||| |    | ||||||||||||||||||||||| ||| ||||||    
T  31142045 aatagaagagagcatttgcgcgttatataaacattaaataaatatgtatgttaaccgatgtgggacttattttgtgtgtgcgt 31142127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 194
Target Start/End: Complemental strand, 34470066 - 34470027
Alignment:
Q  155 ctctgtatcattccaattttatcggatgtcatcgaaggga 194  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  34470066 ctctgtatcattccaattttatcggatgtccccgaaggga 34470027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0856 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 96 - 331
Target Start/End: Original strand, 4885 - 5117
Alignment:
Q  96 taatttgggtcatttcttgatttgtgcgtgtcattcttgcgcatgg-ccatgctaatcttctctgtatcattccaattttatcggatgtcatcgaaggga 194  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||  ||||||||    
T  4885 taatttgggtcatttctcgatttgtgcgtgtcatccttgcgcatgggccatgctgatcttctctgtatcattccaattttatcgaatgtccccgaaggga 4984  T
Q  195 taatagaagaaggtatttccgtgttatataaaagctaaataattgcaaaggttaaccgatgtgggacttatttggtgcgtgcgtgcgaatgtgagacaac 294  Q
    || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    | |||||||    
T  4985 tactagaagaaggtattttcgtgttatataaaagctaaataattgcaaaggttaaccgatgtgggacttatttggtgcgtgcgtacg----ttagacaac 5080  T
Q  295 tagaaaataaaatacagacatgcactgcacttactaa 331  Q
     || |||||||||||||||||||||||||||||||||    
T  5081 aaggaaataaaatacagacatgcactgcacttactaa 5117  T

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Target: scaffold0856; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 4826 - 4872
Alignment:
Q  1 atgatgaaaaaagaagccaataaccgcagccaacgaagggaatcaaa 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  4826 atgatgaaaaaagaagccaataactgcagccaacgaagggaatcaaa 4872  T

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Target: chr8 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 97 - 194
Target Start/End: Original strand, 21634803 - 21634901
Alignment:
Q  97 aatttgggtcatttcttgatttgtgcgtgtcattcttgcgcatgg-ccatgctaatcttctctgtatcattccaattttatcggatgtcatcgaaggga 194  Q
    |||||||  ||||||| |||||||||||||||| |||||||| || |||||||||||||||||||||| ||||||||||||||||||||  ||||||||    
T  21634803 aatttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaaggga 21634901  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 106 - 172
Target Start/End: Complemental strand, 5515604 - 5515537
Alignment:
Q  106 catttcttgatttgtgcgtgtcattcttgcgcatgg-ccatgctaatcttctctgtatcattccaatt 172  Q
    ||||||| ||||||||||||||||  ||||||| || |||||||||||||||||||||| ||||||||    
T  5515604 catttctcgatttgtgcgtgtcatctttgcgcaagggccatgctaatcttctctgtatcgttccaatt 5515537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 9e-25; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 97 - 194
Target Start/End: Original strand, 32089262 - 32089360
Alignment:
Q  97 aatttgggtcatttcttgatttgtgcgtgtcattcttgcgcatgg-ccatgctaatcttctctgtatcattccaattttatcggatgtcatcgaaggga 194  Q
    |||||||  ||||||| |||||||||||||||| |||||||| || |||||||||||||||||||||| ||||||||||||||||||||  ||||||||    
T  32089262 aatttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaaggga 32089360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 97 - 194
Target Start/End: Original strand, 32096735 - 32096833
Alignment:
Q  97 aatttgggtcatttcttgatttgtgcgtgtcattcttgcgcatgg-ccatgctaatcttctctgtatcattccaattttatcggatgtcatcgaaggga 194  Q
    |||||||  ||||||| |||||||||||||||| |||||||| || |||||||||||||||||||||| ||||||||||||||||||||  ||||||||    
T  32096735 aatttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaaggga 32096833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 97 - 194
Target Start/End: Original strand, 39128489 - 39128587
Alignment:
Q  97 aatttgggtcatttcttgatttgtgcgtgtcattcttgcgcatgg-ccatgctaatcttctctgtatcattccaattttatcggatgtcatcgaaggga 194  Q
    |||||||  ||||||| |||||||||||||||| |||||||| || |||||||||||||||||||||| ||||||||||||||||||||  ||||||||    
T  39128489 aatttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaaggga 39128587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 97 - 194
Target Start/End: Complemental strand, 39478556 - 39478458
Alignment:
Q  97 aatttgggtcatttcttgatttgtgcgtgtcattcttgcgcatgg-ccatgctaatcttctctgtatcattccaattttatcggatgtcatcgaaggga 194  Q
    |||||||  ||||||| |||||||||||||||| |||||||| || |||||||||||||||||||||| ||||||||||||||||||||  ||||||||    
T  39478556 aatttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaaggga 39478458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 97 - 194
Target Start/End: Original strand, 41706626 - 41706724
Alignment:
Q  97 aatttgggtcatttcttgatttgtgcgtgtcattcttgcgcatgg-ccatgctaatcttctctgtatcattccaattttatcggatgtcatcgaaggga 194  Q
    |||||||  ||||||| |||||||||||||||| |||||||| || |||||||||||||||||||||| ||||||||||||||||||||  ||||||||    
T  41706626 aatttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaaggga 41706724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 97 - 194
Target Start/End: Complemental strand, 41812260 - 41812162
Alignment:
Q  97 aatttgggtcatttcttgatttgtgcgtgtcattcttgcgcatgg-ccatgctaatcttctctgtatcattccaattttatcggatgtcatcgaaggga 194  Q
    |||||||  ||||||| |||||||||||||||| |||||||| || |||||||||||||||||||||| ||||||||||||||||||||  ||||||||    
T  41812260 aatttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaaggga 41812162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 97 - 194
Target Start/End: Original strand, 32093019 - 32093117
Alignment:
Q  97 aatttgggtcatttcttgatttgtgcgtgtcattcttgcgcatgg-ccatgctaatcttctctgtatcattccaattttatcggatgtcatcgaaggga 194  Q
    |||||||  ||||||| |||||||||||||||| ||||| || || |||||||||||||||||||||| ||||||||||||||||||||  ||||||||    
T  32093019 aatttggaccatttctcgatttgtgcgtgtcatccttgcacaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaaggga 32093117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 97 - 194
Target Start/End: Original strand, 32087907 - 32088005
Alignment:
Q  97 aatttgggtcatttcttgatttgtgcgtgtcattcttgcgcatgg-ccatgctaatcttctctgtatcattccaattttatcggatgtcatcgaaggga 194  Q
    |||||||  ||||||| |||||||||||||||| |||| ||| || ||||| |||||||||||||||| ||||||||||||| ||||||  ||||||||    
T  32087907 aatttggaccatttctcgatttgtgcgtgtcatccttgtgcaggggccatgttaatcttctctgtatcgttccaattttatcagatgtccccgaaggga 32088005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 22785386 - 22785426
Alignment:
Q  158 tgtatcattccaattttatcggatgtcatcgaagggataat 198  Q
    |||||| |||||||||||||||||||| || ||||||||||    
T  22785386 tgtatcgttccaattttatcggatgtcttcaaagggataat 22785426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 9e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 97 - 194
Target Start/End: Original strand, 26217231 - 26217329
Alignment:
Q  97 aatttgggtcatttcttgatttgtgcgtgtcattcttgcgcatgg-ccatgctaatcttctctgtatcattccaattttatcggatgtcatcgaaggga 194  Q
    |||||||  ||||||| |||||||||||||||| |||||||| || |||||||||||||||||||||| ||||||||||||||||||||  ||||||||    
T  26217231 aatttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaaggga 26217329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 117 - 194
Target Start/End: Original strand, 7618947 - 7619025
Alignment:
Q  117 ttgtgcgtgtcattcttgcgcatggc-catgctaatcttctctgtatcattccaattttatcggatgtcatcgaaggga 194  Q
    |||||||||||||  ||||||||||  ||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  7618947 ttgtgcgtgtcatctttgcgcatggatcatgctaatcttctctgtatcattccaattttatcggatgtccccgaaggga 7619025  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 194
Target Start/End: Complemental strand, 11187960 - 11187906
Alignment:
Q  140 ggccatgctaatcttctctgtatcattccaattttatcggatgtcatcgaaggga 194  Q
    |||||||||||||||||||||||| ||||||||||  |||| ||| |||||||||    
T  11187960 ggccatgctaatcttctctgtatcgttccaatttttccggacgtcctcgaaggga 11187906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 18871931 - 18872001
Alignment:
Q  116 tttgtgcgtgtcattcttgcgcatgg--ccatgctaatcttctctgtatcattccaattttatcggatgtc 184  Q
    ||||||||||||||  ||||||| ||  ||||||||||||| ||||||||||| ||| |||||| ||||||    
T  18871931 tttgtgcgtgtcatctttgcgcaaggggccatgctaatcttgtctgtatcatttcaactttatcagatgtc 18872001  T

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Target: chr3 (Bit Score: 59; Significance: 9e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 97 - 194
Target Start/End: Original strand, 38044518 - 38044616
Alignment:
Q  97 aatttgggtcatttcttgatttgtgcgtgtcattcttgcgcatgg-ccatgctaatcttctctgtatcattccaattttatcggatgtcatcgaaggga 194  Q
    |||||||  ||||||| |||||||||||||||| |||||||| || |||||||||||||||||||||| ||||||||||||||||||||  ||||||||    
T  38044518 aatttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaaggga 38044616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 97 - 194
Target Start/End: Complemental strand, 48838086 - 48837988
Alignment:
Q  97 aatttgggtcatttcttgatttgtgcgtgtcattcttgcgcatgg-ccatgctaatcttctctgtatcattccaattttatcggatgtcatcgaaggga 194  Q
    |||||||  ||||||| |||||||||||||||| |||||||| || |||||||||||||||||||||| ||||||||||||||||||||  ||||||||    
T  48838086 aatttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaaggga 48837988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 50152444 - 50152365
Alignment:
Q  106 catttcttgatttgtgcgtgtcattcttgcgcatgg-ccatgctaatcttctctgtatcattccaattttatcggatgtc 184  Q
    ||||||| |||||||||||||||| |||||||| || |||||||||||||||||||||| ||||||||||||| ||||||    
T  50152444 catttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcagatgtc 50152365  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 50904076 - 50903997
Alignment:
Q  106 catttcttgatttgtgcgtgtcattcttgcgcatgg-ccatgctaatcttctctgtatcattccaattttatcggatgtc 184  Q
    ||||||| || ||||||||||||| |||||||| || || ||||||||||||||||||| ||||||||||||||||||||    
T  50904076 catttctcgaattgtgcgtgtcatccttgcgcaggggccttgctaatcttctctgtatcgttccaattttatcggatgtc 50903997  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 183
Target Start/End: Original strand, 50916160 - 50916242
Alignment:
Q  106 catttcttgatttgtgcgtgtcattcttgcgcatgg-----ccatgctaatcttctctgtatcattccaattttatcggatgt 183  Q
    |||||||  ||||||||||||||| |||| ||| ||     |||||| |||||||||| |||| |||||||||||||||||||    
T  50916160 catttctcaatttgtgcgtgtcatccttgtgcaagggccatccatgccaatcttctctatatcgttccaattttatcggatgt 50916242  T

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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 332 - 503
Target Start/End: Complemental strand, 30066980 - 30066809
Alignment:
Q  332 ttcagtttcagagttaagtaacagcgaagaggccttaaggtcgcttattaacttgtagtatctggctcttgcatttgtcaatgtgtgagcgtgtctatct 431  Q
    ||||| |||||| | ||||||||| ||  | ||||| |||||  ||||||| ||| ||||||||| |||||||| |||||||||||||| |||||||| |    
T  30066980 ttcagcttcagactcaagtaacagtgagcaagcctttaggtcatttattaatttgcagtatctggttcttgcatctgtcaatgtgtgagagtgtctatat 30066881  T
Q  432 aagcccaacgcccaataacctgatatcagtccaaaagcgtggacgtaatctagaccaaacgaaccaatgaat 503  Q
    ||||||| | ||||||| | ||| | |||| |    | ||||| ||||||||| ||||||||||| ||||||    
T  30066880 aagcccatcccccaatagcttgaaaacagttctccggtgtggaggtaatctagtccaaacgaacctatgaat 30066809  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 347 - 449
Target Start/End: Complemental strand, 30250679 - 30250577
Alignment:
Q  347 aagtaacagcgaagaggccttaaggtcgcttattaacttgtagtatctggctcttgcatttgtcaatgtgtgagcgtgtctatctaagcccaacgcccaa 446  Q
    |||||||| |||||||||||| |||||| ||||||| |||||| |||||  ||||||||  ||||||||||||  |||||||  |||||||||| || ||    
T  30250679 aagtaacaacgaagaggccttcaggtcgtttattaatttgtagaatctgattcttgcatccgtcaatgtgtgatagtgtctaaataagcccaaccccaaa 30250580  T
Q  447 taa 449  Q
    |||    
T  30250579 taa 30250577  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 32271350 - 32271421
Alignment:
Q  106 catttcttgatttgtgcgtgtcattcttgcgca-tggccatgctaatcttctctgtatcattccaattttat 176  Q
    ||||||| |||||||||||||||| ||||||||  ||||||| ||||||||| |||||| ||||||||||||    
T  32271350 catttctcgatttgtgcgtgtcatccttgcgcaggggccatgataatcttctttgtatcgttccaattttat 32271421  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 327 - 436
Target Start/End: Complemental strand, 30278299 - 30278190
Alignment:
Q  327 actaattcagtttcagagttaagtaacagcgaagaggccttaaggtcgcttattaacttgtagtatctggctcttgcatttgtcaatgtgtgagcgtgtc 426  Q
    |||||||| | |||||| | ||||||||  ||||||||||| || ||  ||||||| |||||| |||||  |||||||| |||||||||| |||| |||     
T  30278299 actaattcggcttcagactcaagtaacaatgaagaggccttgagatcatttattaatttgtagcatctgtttcttgcatctgtcaatgtgcgagcatgtt 30278200  T
Q  427 tatctaagcc 436  Q
    ||| ||||||    
T  30278199 tatataagcc 30278190  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 416
Target Start/End: Original strand, 30185990 - 30186070
Alignment:
Q  336 gtttcagagttaagtaacagcgaagaggccttaaggtcgcttattaacttgtagtatctggctcttgcatttgtcaatgtg 416  Q
    |||||||| | ||||| ||| ||||||||||| |||||  ||||||| ||||||||| ||| |||||| | ||||||||||    
T  30185990 gtttcagactcaagtagcagtgaagaggcctttaggtcatttattaatttgtagtatttggatcttgcttgtgtcaatgtg 30186070  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 450
Target Start/End: Complemental strand, 30789020 - 30788920
Alignment:
Q  350 taacagcgaagaggccttaaggtcgcttattaacttgtagtatctggctcttgcatttgtcaatgtgtgagcgtgtctatctaagcccaacgcccaataa 449  Q
    |||||| ||||| || || || ||| ||| ||| ||||||||||||| ||| |||| |||||||||| ||| || ||||| ||||||| || ||||||||    
T  30789020 taacagtgaagatgctttgagatcgtttaataatttgtagtatctggttctcgcatctgtcaatgtgggagagtttctatataagcccgacccccaataa 30788921  T
Q  450 c 450  Q
    |    
T  30788920 c 30788920  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 450
Target Start/End: Original strand, 30038937 - 30039049
Alignment:
Q  338 ttcagagttaagtaacagcgaagaggccttaaggtcgcttattaacttgtagtatctggctcttgcatttgtcaatgtgtgagcgtgtctatctaagccc 437  Q
    |||||| | ||||||||  ||||| |||||||||||  |||||||  ||| | |||||  |||||||| || |||| ||||||  ||||||  |||||||    
T  30038937 ttcagactcaagtaacaatgaagatgccttaaggtcatttattaatctgttgaatctgattcttgcatctgccaatttgtgagaatgtctaaataagccc 30039036  T
Q  438 aacgcccaataac 450  Q
    ||| |||||||||    
T  30039037 aacccccaataac 30039049  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 450
Target Start/End: Complemental strand, 30056228 - 30056116
Alignment:
Q  338 ttcagagttaagtaacagcgaagaggccttaaggtcgcttattaacttgtagtatctggctcttgcatttgtcaatgtgtgagcgtgtctatctaagccc 437  Q
    |||||| | ||||||||  ||||| |||||||||||  |||||||  ||| | |||||  |||||||| || |||| ||||||  ||||||  |||||||    
T  30056228 ttcagactcaagtaacaatgaagatgccttaaggtcatttattaatctgttgaatctgattcttgcatctgccaatttgtgagaatgtctaaataagccc 30056129  T
Q  438 aacgcccaataac 450  Q
    ||| |||||||||    
T  30056128 aacccccaataac 30056116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 450
Target Start/End: Original strand, 30108415 - 30108527
Alignment:
Q  338 ttcagagttaagtaacagcgaagaggccttaaggtcgcttattaacttgtagtatctggctcttgcatttgtcaatgtgtgagcgtgtctatctaagccc 437  Q
    |||||| | ||||||||  ||||| |||||||||||  |||||||  ||| | |||||  |||||||| || |||| ||||||  ||||||  |||||||    
T  30108415 ttcagactcaagtaacaatgaagatgccttaaggtcatttattaatctgttgaatctgattcttgcatctgccaatttgtgagaatgtctaaataagccc 30108514  T
Q  438 aacgcccaataac 450  Q
    ||| |||||||||    
T  30108515 aacccccaataac 30108527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 450
Target Start/End: Original strand, 30233075 - 30233187
Alignment:
Q  338 ttcagagttaagtaacagcgaagaggccttaaggtcgcttattaacttgtagtatctggctcttgcatttgtcaatgtgtgagcgtgtctatctaagccc 437  Q
    |||||| | ||||||||  ||||| |||||||||||  |||||||  ||| | |||||  |||||||| || |||| ||||||  ||||||  |||||||    
T  30233075 ttcagactcaagtaacaatgaagatgccttaaggtcatttattaatctgttgaatctgattcttgcatctgccaatttgtgagaatgtctaaataagccc 30233174  T
Q  438 aacgcccaataac 450  Q
    ||| |||||||||    
T  30233175 aacccccaataac 30233187  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 177
Target Start/End: Original strand, 7772341 - 7772377
Alignment:
Q  141 gccatgctaatcttctctgtatcattccaattttatc 177  Q
    ||||||||||||||||||||||| |||||||||||||    
T  7772341 gccatgctaatcttctctgtatcgttccaattttatc 7772377  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 177
Target Start/End: Original strand, 7777949 - 7777985
Alignment:
Q  141 gccatgctaatcttctctgtatcattccaattttatc 177  Q
    ||||||||||||||||||||||| |||||||||||||    
T  7777949 gccatgctaatcttctctgtatcgttccaattttatc 7777985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 141 - 177
Target Start/End: Original strand, 7792741 - 7792777
Alignment:
Q  141 gccatgctaatcttctctgtatcattccaattttatc 177  Q
    |||||||||||||||||| |||| |||||||||||||    
T  7792741 gccatgctaatcttctctatatcgttccaattttatc 7792777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 183
Target Start/End: Complemental strand, 18352682 - 18352651
Alignment:
Q  152 cttctctgtatcattccaattttatcggatgt 183  Q
    ||||||||||||||||||||||||||||||||    
T  18352682 cttctctgtatcattccaattttatcggatgt 18352651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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