View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11690_low_1 (Length: 1012)
Name: NF11690_low_1
Description: NF11690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11690_low_1 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 992; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 992; E-Value: 0
Query Start/End: Original strand, 1 - 1012
Target Start/End: Complemental strand, 3776142 - 3775131
Alignment:
| Q |
1 |
cggcaaaagccaaggggcactgggatagtacggaacttgcggttggaagctttgacaatttggcataacttgttcaacagaactgctggcagctgcatct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3776142 |
cggcaaaagccaaggggcactgggatagtacggaacttgtggttggaagctttgacaatttggcataacttgttcaacagaactgctggcagctgcatct |
3776043 |
T |
|
| Q |
101 |
tctgtcagcgttgttgatgtgtcagaagatttgatggaatgttcatcactcttttcttccccaacatagggtacatgaatctgcagtgcttccggtctaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3776042 |
tctgtcagcgttgttgatgtgtcagaagatttgatggaatgttcatcactcttttcttccccaacatagggtacatgaatccgcagtgcttccggtctaa |
3775943 |
T |
|
| Q |
201 |
tgaatccgtttttcggggaaatattaactccttgatcagcaaggttcaatgcagattccattgattcacacaaaggggtatcggtcctgaatgtaaagac |
300 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3775942 |
tgaatccatttttctgggaaatattaactccttgatcagcaaggttcaatgcagattccattgattcacacaaaggtgtatcggtcctgaatgtaaagac |
3775843 |
T |
|
| Q |
301 |
tgtgccattacagtttagtgaaggatgatggactccgtttggcgagtcggatagagaattctgaacagctgtttcaggtacagttatttggcgaaagtga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3775842 |
tgtgccattacagtttagtgaaggatgatggactccgtttggcgagtcggatagagaattctgaacagctgtttcaggtacagttatttggcgaaagtga |
3775743 |
T |
|
| Q |
401 |
gaagcagaattcttgttcttcctacgaccggcgcctacaggcacatttctcatggctcccccggcagtccagtatctctggcatttcttgcaaaaatggc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3775742 |
gaagcagaattcttgttcttcctacgaccggcgcctacaggcacatttctcatggctcccccggcagtccagtatctctggcatttcttgcaaaaatggc |
3775643 |
T |
|
| Q |
501 |
gaggttggttaacattgtagttattgtagtagcagaatttggtgtccatgctataacaacggggacacggcagtattttgtctggctttttcagggtctt |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3775642 |
gaggttggttaacattgtagttattgtagtagcagaatttggtgtccatgctataacaacggggacacggcagtattttgtctggctttttcagggtctt |
3775543 |
T |
|
| Q |
601 |
atcatgcgaattctcagtatgttcttccataatctttgaagttttcaatgtattttgctcgtcctcagtggaggggttaattgattcttccactaatctc |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3775542 |
atcatgcgaattctcagtatgttcttccataatctttgaagttttcaatgtattttgctcgtcctcagtggaggggttaattgattcttccactaatctc |
3775443 |
T |
|
| Q |
701 |
gagtttgtgtctagatcagtgatcttttctgatgattgggtgagagcttcatctttttccttcttacatttggttgattcatcttccattgtgtcctgaa |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3775442 |
gagtttgtgtctagatcagtgatcttttctgatgattgggtgagagcttcatctttttccttcttacatttggttgattcatcttccattgtgtcctgaa |
3775343 |
T |
|
| Q |
801 |
ttcaagaaaactcttgatgagtatgatattctaagccaaaaatttagtacaaacagattaattagcgcttaaagcataaaggcttatcacatacaaaaga |
900 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3775342 |
ttcaagaaaactcttgatgagtatgatattctaagccaaaaatttagtacaaacagattaattagcgcttaaagcataaaggcttatcacatacaaaaga |
3775243 |
T |
|
| Q |
901 |
aaaaattaaattaaattgttttcaaacaagctttttcgaatggtctcacaagtgtttatgtgcatgtcaaaacacttatttggacataagctgaaaacag |
1000 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3775242 |
aaaaattaaattaaattgttttcaaacaagctttttcgaatggtctcacaagtgtttatgtgcatgtcaaaacacttatttggacataagctgaaaacag |
3775143 |
T |
|
| Q |
1001 |
tttatgcacatg |
1012 |
Q |
| |
|
|||||||||||| |
|
|
| T |
3775142 |
tttatgcacatg |
3775131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 928 - 1006
Target Start/End: Complemental strand, 3775113 - 3775034
Alignment:
| Q |
928 |
aagctttttcgaatggtctcacaagtgtttatgtgcatgtca-aaacacttatttggacataagctgaaaacagtttatg |
1006 |
Q |
| |
|
||||| || ||||| ||||||||||||||||||| ||||||| ||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
3775113 |
aagctcttccgaatagtctcacaagtgtttatgtacatgtcataaacacttatttgtacataagccgaaaacagtttatg |
3775034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 9e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 380 - 612
Target Start/End: Complemental strand, 2823788 - 2823556
Alignment:
| Q |
380 |
acagttatttggcgaaagtgagaagcagaattcttgttcttcctacgaccggcgcctacaggcacatttctcatggctcccccggcagtccagtatctct |
479 |
Q |
| |
|
|||||||| |||||| ||||||||| ||| ||||||| || ||||||||||| ||||| || || |||||||||| ||| ||||||||||| ||||||| |
|
|
| T |
2823788 |
acagttatctggcgatagtgagaagaagagctcttgttttttctacgaccggcacctaccggtacgtttctcatggttccaccggcagtccaatatctct |
2823689 |
T |
|
| Q |
480 |
ggcatttcttgcaaaaatggcgaggttggttaacattgtagttattgtagtagcagaatttggtgtccatgctataacaacggggacacggcagtatttt |
579 |
Q |
| |
|
|||| |||||||| ||||| || |||||||| |||||||| ||||| ||||||||||| || ||||||||||||| ||| || ||||| || | |||||| |
|
|
| T |
2823688 |
ggcagttcttgcagaaatgacggggttggttgacattgtaattattatagtagcagaacttcgtgtccatgctattacagcgaggacaaggaactatttt |
2823589 |
T |
|
| Q |
580 |
gtctggctttttcagggtcttatcatgcgaatt |
612 |
Q |
| |
|
||| || ||||| ||| ||||||| || ||||| |
|
|
| T |
2823588 |
gtccggttttttgaggatcttatcttgtgaatt |
2823556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 7e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 410 - 554
Target Start/End: Complemental strand, 31771940 - 31771796
Alignment:
| Q |
410 |
ttcttgttcttcctacgaccggcgcctacaggcacatttctcatggctcccccggcagtccagtatctctggcatttcttgcaaaaatggcgaggttggt |
509 |
Q |
| |
|
||||||||||| | ||||| || || ||||| ||||||||||| | ||| || |||||||| ||||| || |||||||| |||||||| ||||| |||| |
|
|
| T |
31771940 |
ttcttgttcttgcggcgaccagctccaacaggaacatttctcattgttcctcctgcagtccaatatctttgacatttcttacaaaaatgacgaggctggt |
31771841 |
T |
|
| Q |
510 |
taacattgtagttattgtagtagcagaatttggtgtccatgctat |
554 |
Q |
| |
|
| |||||||| || ||| |||| || ||||||||||||||||||| |
|
|
| T |
31771840 |
tgacattgtaattgttgaagtaacaaaatttggtgtccatgctat |
31771796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 413 - 552
Target Start/End: Complemental strand, 18198314 - 18198175
Alignment:
| Q |
413 |
ttgttcttcctacgaccggcgcctacaggcacatttctcatggctcccccggcagtccagtatctctggcatttcttgcaaaaatggcgaggttggttaa |
512 |
Q |
| |
|
|||||||| | |||||| || |||| | ||| ||||||| ||| ||| || | |||||||||||| ||||| || ||||| || || ||||| || || | |
|
|
| T |
18198314 |
ttgttcttgcgacgacctgcccctataagcatatttctcgtggttcctccagaagtccagtatctttggcaatttttgcagaagtgtcgaggctgtttga |
18198215 |
T |
|
| Q |
513 |
cattgtagttattgtagtagcagaatttggtgtccatgct |
552 |
Q |
| |
|
| |||||||| ||||||||||| ||||| |||||| |||| |
|
|
| T |
18198214 |
cgttgtagttgttgtagtagcaaaattttgtgtccgtgct |
18198175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 413 - 552
Target Start/End: Complemental strand, 18230940 - 18230801
Alignment:
| Q |
413 |
ttgttcttcctacgaccggcgcctacaggcacatttctcatggctcccccggcagtccagtatctctggcatttcttgcaaaaatggcgaggttggttaa |
512 |
Q |
| |
|
|||||||| | |||||| || |||||| || ||||||| ||||||| |||| |||||| || |||||||| || ||||| || || || || || || | |
|
|
| T |
18230940 |
ttgttcttgcgacgacctgcacctacaatcatatttctcgtggctcctccggaagtccaatacctctggcagtttttgcagaagtgtcggggctgtttga |
18230841 |
T |
|
| Q |
513 |
cattgtagttattgtagtagcagaatttggtgtccatgct |
552 |
Q |
| |
|
| |||||||| || ||||| || ||||| ||||||||||| |
|
|
| T |
18230840 |
cgttgtagttgttatagtaacaaaattttgtgtccatgct |
18230801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University