View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11690_low_10 (Length: 518)
Name: NF11690_low_10
Description: NF11690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11690_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 26 - 414
Target Start/End: Original strand, 7703994 - 7704385
Alignment:
| Q |
26 |
ggctacaagttgtaattgagaaatccttcaaatcttccccacacacgtatcttagttaggaaaaccaacccaattttaaatgaacatcgctaaaattact |
125 |
Q |
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| T |
7703994 |
ggctacaagttgtaattgagaaatccttcaaagcttccccacacacgtatcttagttaggaaaaccaacccaattt-aaatggtcatcgctaaaattact |
7704092 |
T |
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| Q |
126 |
ttcacgtcccgtagataaaagcatgaatgtccattagggtatggtgaaataagaaaatcatacattcaaataaattagagacagtggagcaagatcctaa |
225 |
Q |
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| T |
7704093 |
ttcacgtcccgtagataaaagcatgaatgtccattagggtatggtgaaataagaaaatcatacattcaaataaattagagacagtggagtaagatcctaa |
7704192 |
T |
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| Q |
226 |
gactcacattctgggaatgtgctctgactaccatttgttgatttaaatatttgtaaatattgtgatattcatccaaccatacatgaaaattattaattat |
325 |
Q |
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| T |
7704193 |
gactcacattttgggaatgtgctctgactaccatttgttgatttaaatatttgtaaatattgtgatattcatccaaccatacatgaaaattattaattat |
7704292 |
T |
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| Q |
326 |
attaatattgtgaacatgtggttgaactgcagcaactggttctcactttgg----gtacatatattatgccgacagtttagaatattattgtt |
414 |
Q |
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| T |
7704293 |
attaatattgtgaacatgtggttgaactgcagcaactggttctcactttggatatatatatatattgtgccgacagtttagaatattattgtt |
7704385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 400 - 505
Target Start/End: Original strand, 7705336 - 7705441
Alignment:
| Q |
400 |
tagaatattattgttgatcctgatgtagctatgcataatccacaacttcagaagaaacttgatttgattagagaatattttattcaaggtaaagatgttg |
499 |
Q |
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| T |
7705336 |
tagaatattattgttggtcatgatgtagctgtgcataatccgcaacttcagaaggaacttgatctagttagagaatatcctattcaaggtaactatgttg |
7705435 |
T |
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| Q |
500 |
atgtcc |
505 |
Q |
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| T |
7705436 |
atgtcc |
7705441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 364 - 505
Target Start/End: Original strand, 38233249 - 38233390
Alignment:
| Q |
364 |
gttctcactttgggtacatatattatgccgacagtttagaatattattgttgatcctgatgtagctatgcataatccacaacttcagaagaaacttgatt |
463 |
Q |
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| T |
38233249 |
gttctcactttggctaccgatattgtgctggcagttcataatattattgttgatcatgaagtagttgcgcttaatctgcaacttcaaaaggaacttgatc |
38233348 |
T |
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| Q |
464 |
tgattagagaatattttattcaaggtaaagatgttgatgtcc |
505 |
Q |
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| T |
38233349 |
ttgttagagaatgtcttattaaaggtgaagatgttgaggtcc |
38233390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 437 - 497
Target Start/End: Complemental strand, 16469678 - 16469618
Alignment:
| Q |
437 |
atccacaacttcagaagaaacttgatttgattagagaatattttattcaaggtaaagatgt |
497 |
Q |
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| T |
16469678 |
atccacaactttagaaggaacttgactttgttagagaatatcttattcgaggtaaagatgt |
16469618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 504
Target Start/End: Original strand, 6891392 - 6891446
Alignment:
| Q |
450 |
gaagaaacttgatttgattagagaatattttattcaaggtaaagatgttgatgtc |
504 |
Q |
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| T |
6891392 |
gaagaaacttgatcttattcccgaatatcttattcaaggtaaagatgttgatgtc |
6891446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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