View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11690_low_11 (Length: 476)
Name: NF11690_low_11
Description: NF11690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11690_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 45121761 - 45121999
Alignment:
| Q |
9 |
aatgaagtttgacattaaggatgttgagggttgcttagccatcaaaggctatgtgaactgggcggcttcggttcttgattcttctttatggtatgagaag |
108 |
Q |
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| T |
45121761 |
aatgaagtttgacattaaggatgttgagggtttcttagccatcaaaggctatgtgaactgggcggcttcggttcttgattcttctttatggtatgagaag |
45121860 |
T |
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| Q |
109 |
tagttatgtaatttaattcaattgttcttgaaatatgtcgggtttattatcttttatattttaatacgtttaattacaatgtcatataacatgcaatgta |
208 |
Q |
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| T |
45121861 |
cagttatgtaatttaattcaattgttcttgaaatatgtcgggtttattatcttttatattttaatacgtttaattacaatgtcatataacatgcaatgta |
45121960 |
T |
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| Q |
209 |
tataagaatgatcaagggtaaaaaatgttgggcttataa |
247 |
Q |
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| T |
45121961 |
tataagaatgatcaagggtaaaaaatgttgggcttataa |
45121999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 285 - 461
Target Start/End: Original strand, 45122166 - 45122342
Alignment:
| Q |
285 |
atacatattttttactcggtaataaaatctctacactaacattctttttgagcaatattcaagtgcccgagtgttgatattataaatcaatactaagttc |
384 |
Q |
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| T |
45122166 |
atacatattttttactcagtaataaaatctctacactaacattctttttgagcaatattcaagtggccgagtgttgatattataaatcaatgctaagttc |
45122265 |
T |
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| Q |
385 |
ttctcactagcgtattatcactgatgtttcctttaagataaatggcaacactactaaattctcttccccaatatctg |
461 |
Q |
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| T |
45122266 |
ttctcactagcgtattatcactgatgtttcctttaagataaatggcaacactactaaattcttttccccaatatctg |
45122342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 242 - 299
Target Start/End: Original strand, 45122028 - 45122085
Alignment:
| Q |
242 |
ttataaaaaatatagtataaatagtttttgcatcagacactgaatacatattttttac |
299 |
Q |
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| T |
45122028 |
ttataaaaaatatagtataaatagtttttgcatcagacactgaatacatattttttac |
45122085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 45122628 - 45122693
Alignment:
| Q |
152 |
ttattatcttttatattttaatacgtttaattacaatgtcatataacatgcaatgtatataagaat |
217 |
Q |
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| T |
45122628 |
ttattatcttttatatttcaatacatttaattgcattgtcatataacatgcgatgtatataagaat |
45122693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 45122692 - 45122750
Alignment:
| Q |
166 |
attttaatacgtttaattacaatgtcatataacatgcaatgtatataagaatgatcaag |
224 |
Q |
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| T |
45122692 |
atttcaatacatttaattgcaatgtcataaaacatgcaaagtatataagaatgatcaag |
45122750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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