View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11690_low_13 (Length: 460)
Name: NF11690_low_13
Description: NF11690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11690_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Original strand, 11557687 - 11558126
Alignment:
| Q |
1 |
aagtggaggataagatccacacacattacgtgtatagagaccttgttggaaactataatttatatggagctgaaagctggattaaggagcttcaaagaat |
100 |
Q |
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||||||| ||||||||||| |||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11557687 |
aagtggaagataagatccatacacattacgtgtatagagatcttgttggtgaatataatttatatggagctgaaagctggattaaggagcttcaaagaat |
11557786 |
T |
|
| Q |
101 |
atgtgagagatctttaggctctaatgttgaagcaatacctgttgaagaaactataggaggttaatcacactttgtcttctaaatttacccttccaaatat |
200 |
Q |
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| T |
11557787 |
gtgcgagagatctttaggctctaatgttgaagcaatacctgttgaagaaactataggaggttaatc-----ttgtcttctaaatttacccttccaaatat |
11557881 |
T |
|
| Q |
201 |
ctctattcatctattttccttgtaaattttatatttagcgaagttaatcaatattatattgctaattattgttcagtgatccaaacacttgaagggagga |
300 |
Q |
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| T |
11557882 |
ctctattcatctattttccttgtaaattttatatttagcgaatttaattaatattatattgctaattattgttcagtgatccaaacacttgaagggagga |
11557981 |
T |
|
| Q |
301 |
atagtgtgataaagattgctgatagaatggtgaagatgttttgtgaatgcttaacaatgcatggtcaagtggaattgaaccatttaactcttgatagcat |
400 |
Q |
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| T |
11557982 |
atagtgtgataaagcttgctgatagaatggtgaagatgttttgtgaatgcttaacaatgcctggtcaagtggaattgaaccatttaactcttgatagcat |
11558081 |
T |
|
| Q |
401 |
tggtggggttagagtctctattcgcgcaaccaccgacgatgatgc |
445 |
Q |
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| T |
11558082 |
tggtggggttagagtctctattcgcgcaaccaccgacgatgatgc |
11558126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 443
Target Start/End: Original strand, 11544266 - 11544708
Alignment:
| Q |
1 |
aagtggaggataagatccacacacattacgtgtatagagaccttgttggaaactataatttatatggagctgaaagctggattaaggagcttcaaagaat |
100 |
Q |
| |
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||||||| ||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11544266 |
aagtggaagataagatccatacacattacgtgtatagagatcttgttgggaactataatttatatggagctgaaagctggattaaggagcttcaaagaat |
11544365 |
T |
|
| Q |
101 |
atgtgagagatctttaggctctaatgttgaagcaatacctgttgaagaaactataggaggttaatcacactttgtcttctaaatttacccttccaaatat |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
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| T |
11544366 |
gtgtgagagatctttaggctcttatgttgaagcaatacctgttgaagaaactataggaggttaatcacactttgttttctaaatttacccttccaaaaat |
11544465 |
T |
|
| Q |
201 |
ctctattcatctattttccttgtaaattttatatttagcgaagttaatcaatattatattgctaattattgttcagtgatccaaacacttgaagggagga |
300 |
Q |
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| T |
11544466 |
ctctattcatctattttccttgtaaattttatatttatctaaaataattaatattgtattgctaattattgttcagtgatccaaacacttgaagggagga |
11544565 |
T |
|
| Q |
301 |
atagtgtgataaagattgctgatagaatggtgaagatgttttgtgaatgcttaacaatgcatggtcaagtggaattgaaccatttaactcttgatagcat |
400 |
Q |
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| T |
11544566 |
atagtgtgataaagcttgctcagagaatggtcaaaatgttttgtgaaagtttaacaatgcctggtcaattggaattgaaccatttaactcttgctagcat |
11544665 |
T |
|
| Q |
401 |
tggtggggttagagtctctattcgcgcaaccaccgacgatgat |
443 |
Q |
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|||||| ||||||||||| ||||| ||||| ||||||||| |
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| T |
11544666 |
tggtggtattagagtctcttttcgcagcaccacggacgatgat |
11544708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 5e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 277 - 443
Target Start/End: Complemental strand, 12064468 - 12064301
Alignment:
| Q |
277 |
tgatccaaacacttgaagggaggaatagtgtgataaagattgctgatagaatggtgaagatgttttgtgaatgcttaacaatgcatggtcaagtggaatt |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12064468 |
tgatccaaacacttgaagggaggaatagtgtgataaagcttgctgatagaatggtcaaaatgttttgtgaatgcttaacaatgcctggtcaagtggaatt |
12064369 |
T |
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| Q |
377 |
gaaccatttaactcttgatagcattggtgggg-ttagagtctctattcgcgcaaccaccgacgatgat |
443 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||| ||||| |
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| T |
12064368 |
gaaccatttaactcttgatagcattggtggggtttagagtctctcttcgcgataccaccgacaatgat |
12064301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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