View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11690_low_19 (Length: 292)
Name: NF11690_low_19
Description: NF11690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11690_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 6138934 - 6139142
Alignment:
| Q |
1 |
ctgataatgaaatggcttggagaatctcaccagcgggacctgaatttatcaatctgcagacagcagtacacataggttaaagggatttcgtaaagtggct |
100 |
Q |
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| T |
6138934 |
ctgatgatgaaatggctgggagaatctcaccagcaggacctgaatttatcaatctgcagacagcagtacacataggtcaaagggatttcgtaaagtggct |
6139033 |
T |
|
| Q |
101 |
cgagagagagatatgatcaatgcatatatcttgagttgtttcattattaggccatatatttcaagatttataaattgaaataatcaacaagacaggaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6139034 |
cgagagagagatatgatcaatgcatatatcttgagttgtttcattattaggccatagatttcaagatttataaattgaaataatcaacaagacaggaaga |
6139133 |
T |
|
| Q |
201 |
tggatgggg |
209 |
Q |
| |
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||||||||| |
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| T |
6139134 |
tggatgggg |
6139142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 13283164 - 13282953
Alignment:
| Q |
1 |
ctgataatgaaatggcttggagaatctcaccagcgggacctgaatttatcaatctgcagacagcagtacacataggttaaagggatttcgtaaagtggct |
100 |
Q |
| |
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||||| |||||| |||| |||||||||||||||| ||||| | ||||||||||||||||| |||||||| |||| || | |||||||||||||||||||| |
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| T |
13283164 |
ctgatgatgaaacggctgggagaatctcaccagcaggaccagcatttatcaatctgcagagagcagtacgcataagtcagagggatttcgtaaagtggct |
13283065 |
T |
|
| Q |
101 |
cgagagagagatatgatcaatgcatatatcttgagttgtttcattattaggccatatatttcaagatttataaattgaaa-----taatcaacaagacag |
195 |
Q |
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| T |
13283064 |
cgaga--gagatatgatcaatgcatatatcttgagttgttttattattaggccatagatttcaagatttatgaagtgaaatggagtaatcaacaagacag |
13282967 |
T |
|
| Q |
196 |
gaagatggatgggg |
209 |
Q |
| |
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|||||||||||||| |
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| T |
13282966 |
gaagatggatgggg |
13282953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 7 - 209
Target Start/End: Original strand, 6164257 - 6164457
Alignment:
| Q |
7 |
atgaaatggcttggagaatctcaccagcgggacctgaatttatcaatctgcagacagcagtacacataggttaaagggatttcgtaaagtggctcgagag |
106 |
Q |
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|||||| |||| |||||||||||||||| ||||| | |||||||| ||||||| ||||||||||||| || | ||||||||||||| ||||||| |||| |
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| T |
6164257 |
atgaaacggctgggagaatctcaccagcaggaccagcatttatcattctgcagggagcagtacacataagtcagagggatttcgtaatgtggctcaagag |
6164356 |
T |
|
| Q |
107 |
agagatatgatcaatgcatatatcttgagttgtttcattattaggccatatatttcaagatttataaattgaaataatcaacaagacaggaagatggatg |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||| |||||||| |
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| T |
6164357 |
--agatatgatcaatgcatatatcttgagttgtttcattattaggccattgatttcaagatttatgaagtgaaataatcaacaagacaggaggatggatg |
6164454 |
T |
|
| Q |
207 |
ggg |
209 |
Q |
| |
|
||| |
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|
| T |
6164455 |
ggg |
6164457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 6234040 - 6234178
Alignment:
| Q |
1 |
ctgataatgaaatggcttggagaatctcaccagcgggacctgaatttatcaatctgcagacagcagtacacataggttaaagggatttcgtaaagtggct |
100 |
Q |
| |
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||||| ||||||||||| |||||||||||||||| ||||| | ||||||||||||||||| |||||||||||||||| | ||||||||||||||||| || |
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| T |
6234040 |
ctgatgatgaaatggctgggagaatctcaccagcaggaccagcatttatcaatctgcagagagcagtacacataggtcagagggatttcgtaaagtgtct |
6234139 |
T |
|
| Q |
101 |
cgagagagagatatgatcaatgcatatatcttgagttgttt |
141 |
Q |
| |
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| T |
6234140 |
c--gagagatatatgatcaatgcatatatcttgagttgttt |
6234178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 2 - 136
Target Start/End: Original strand, 6241827 - 6241959
Alignment:
| Q |
2 |
tgataatgaaatggcttggagaatctcaccagcgggacctgaatttatcaatctgcagacagcagtacacataggttaaagggatttcgtaaagtggctc |
101 |
Q |
| |
|
|||| |||||| |||| |||||||||||||||| ||||| | |||||||||||||||| || ||||||||||||| | ||||||| ||||||||||||| |
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| T |
6241827 |
tgatgatgaaacggctgggagaatctcaccagcaggaccagcatttatcaatctgcagtgagaagtacacataggtcagagggattccgtaaagtggctc |
6241926 |
T |
|
| Q |
102 |
gagagagagatatgatcaatgcatatatcttgagt |
136 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
6241927 |
--gagagagatatgatcaatgcatatatcttgagt |
6241959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 134
Target Start/End: Original strand, 6255077 - 6255185
Alignment:
| Q |
24 |
atctcaccagcgggacctgaatttatcaatctgcagacagcagtacacataggttaaagggatttcgtaaagtggctcgagagagagatatgatcaatgc |
123 |
Q |
| |
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||||||||||| ||||| | ||||||||||||||| | ||||||||||| |||| | ||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
6255077 |
atctcaccagcaggaccagcatttatcaatctgcaaagagcagtacacacaggtcagagggatttcgtaaagtgactc--gagagagatatgatcaatgc |
6255174 |
T |
|
| Q |
124 |
atatatcttga |
134 |
Q |
| |
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|||||||||| |
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|
| T |
6255175 |
ttatatcttga |
6255185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 136
Target Start/End: Complemental strand, 6859315 - 6859282
Alignment:
| Q |
103 |
agagagagatatgatcaatgcatatatcttgagt |
136 |
Q |
| |
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||||||||| |||||||||||||||||||||||| |
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|
| T |
6859315 |
agagagagacatgatcaatgcatatatcttgagt |
6859282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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