View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11690_low_20 (Length: 258)
Name: NF11690_low_20
Description: NF11690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11690_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 25978730 - 25978962
Alignment:
| Q |
19 |
ttttggtggctcctttttcagcacttcttaataccacggcaata----catgctcttactccaacgcatcggcatcatagagtgccttccgaaccaaggc |
114 |
Q |
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| T |
25978730 |
ttttggtggctcctttttcagcacttcttaataccacggcaatatatacatgctcttactccaacgcatcggcatcatagagtgccttccgaaccaaggc |
25978829 |
T |
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| Q |
115 |
aacttctttgagtgcattggaaattcttcaattgcacgcaacaacagcaaaggtataacatcttccacagcaactgcagcagcaaggttgcttttcttct |
214 |
Q |
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| T |
25978830 |
aacttctttgagtgcattggaaattcttcaattgcacgcaacaacagcaaaggtataacatcttccacagcaactgcagcagcaaggttgcttttcttct |
25978929 |
T |
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| Q |
215 |
taattgatctctccttttcttgtttaggttcat |
247 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
25978930 |
taattgatctctccttttcttgtttaggttcat |
25978962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 34 - 220
Target Start/End: Complemental strand, 31829813 - 31829611
Alignment:
| Q |
34 |
tttcagcacttcttaataccacggcaatacatgctcttactccaacgcatcggcatcatagagtgccttccgaaccaaggcaacttctttgagtgcattg |
133 |
Q |
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| T |
31829813 |
tttcagcccttcttgataccactgcaatatgtgctcttcctccagcgcatcagcatcatagagtgccttcagaaccagggcaacttccttgagtgcattg |
31829714 |
T |
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| Q |
134 |
g----------------aaattcttcaattgcacgcaacaacagcaaaggtataacatcttccacagcaactgcagcagcaaggttgcttttcttcttaa |
217 |
Q |
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| T |
31829713 |
gaagtggacttgcaagaaaattcctcaattgcacgcagcaacagcaacggcataccctcttccacagcaactgcagcagcaaggtaattcttcttcttaa |
31829614 |
T |
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| Q |
218 |
ttg |
220 |
Q |
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||| |
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| T |
31829613 |
ttg |
31829611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 59 - 247
Target Start/End: Original strand, 25973411 - 25973607
Alignment:
| Q |
59 |
aatacatgctcttactccaacgcatcggcatcatagagtgccttccgaaccaaggcaacttctttgagtgc--------attggaaattcttcaattgca |
150 |
Q |
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|||||| |||||| ||||||| |||| |||| |||||||||||| ||| |||||||||||| ||||| | ||||| ||||| ||||||||| |
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| T |
25973411 |
aatacacgctcttcctccaacacatcagcattgtagagtgccttcagaaacaaggcaacttccttgagacctcaagcacattggtaattcctcaattgca |
25973510 |
T |
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| Q |
151 |
cgcaacaacagcaaaggtataacatcttccacagcaactgcagcagcaaggttgcttttcttcttaattgatctctccttttcttgtttaggttcat |
247 |
Q |
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| T |
25973511 |
catagcaacaacaaaggcgcaacctcttccacagcaaatgcagcagcaaggttgctcttcctcttaattgatttatccttctcttgtttaggttcat |
25973607 |
T |
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