View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11690_low_21 (Length: 255)
Name: NF11690_low_21
Description: NF11690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11690_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 35079812 - 35080054
Alignment:
| Q |
1 |
aaagatcattgaaatagcgagcaaaacggataaacaagctgaaggtgccatttcacttttgttaattataatgaactatagaacttactttatggttctt |
100 |
Q |
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| T |
35079812 |
aaagatcattgaaataacgagcaaaacggataaacaagctgaaggtgccatttctcttttgttaattataatgaactatagaacttactttatggttctt |
35079911 |
T |
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| Q |
101 |
aatttataggcaaattttacatgt-atctcaaaaatgacggttttaaaaccgttctttttaacaaaagaatactaaagagtaaagacagttttttgcgta |
199 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35079912 |
aatttataggcaaattttacatgtcatctcaaaaatgacggttttaaaaccgttctttttaacaaaagaatactaaagagtaaagacagttttttgcgta |
35080011 |
T |
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| Q |
200 |
aatcgagtcaagcaaatccaccagccattaatactctttgttc |
242 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35080012 |
aatcgagtcaagcaaatccaccagccattaatactctttgttc |
35080054 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 23922776 - 23922858
Alignment:
| Q |
1 |
aaagatcattgaaatagcgagcaaaacggataaacaagctgaaggtgcca-tttcacttttgttaattataatgaactataga |
82 |
Q |
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||||||||||||||| | |||||||| ||||||| | ||||||| ||||| |||| |||||||||||||||||| || ||||| |
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| T |
23922776 |
aaagatcattgaaatggtgagcaaaatggataaataggctgaagatgccattttctcttttgttaattataatggacaataga |
23922858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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