View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11690_low_22 (Length: 247)
Name: NF11690_low_22
Description: NF11690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11690_low_22 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 1832247 - 1832001
Alignment:
| Q |
1 |
atgaacattcgacggttaaactgactaatgaaagatattcaaggatcaaactcactaaagaaagatatattcatgaatatttttgtaaatttgacagatt |
100 |
Q |
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| T |
1832247 |
atgaatattcgacggttaaactgactaatgaaagatttttaaggatcaaactcactaaagaaagatatattcatgaatatttttgtaaatttgacagatt |
1832148 |
T |
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| Q |
101 |
taaagaccatagtgacaatgtttgacacattcaagaatatggttatattatgtctaggaatcaaaccctaactaatgttatcgctgattagaataaaaca |
200 |
Q |
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| T |
1832147 |
taaagaccacagtgacaatgtttgacacattcaagaatatggttatattatgtctaggaatcaaaccctaactaatgttatcgctgattagaataaaaca |
1832048 |
T |
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| Q |
201 |
attgcaataaaaatcatataataagttaaaattgaatcatgaatcat |
247 |
Q |
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| T |
1832047 |
attgcaataaaaatcatataataagttaaaattgaatcatgcatcat |
1832001 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 134
Target Start/End: Original strand, 7713662 - 7713754
Alignment:
| Q |
42 |
aggatcaaactcactaaagaaagatatattcatgaatatttttgtaaatttgacagatttaaagaccatagtgacaatgtttgacacattcaa |
134 |
Q |
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| T |
7713662 |
aggaccaaactcggtaaagaaagatacattcaagaatatttttgcaattttgatacaatcaaggattatagtgacaatgcttgacacattcaa |
7713754 |
T |
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