View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11690_low_23 (Length: 239)

Name: NF11690_low_23
Description: NF11690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11690_low_23
NF11690_low_23
[»] chr3 (4 HSPs)
chr3 (1-223)||(6138395-6138617)
chr3 (53-223)||(13283849-13284019)
chr3 (52-131)||(21570356-21570435)
chr3 (1-30)||(13283479-13283508)
[»] chr2 (1 HSPs)
chr2 (52-131)||(16576236-16576315)
[»] chr1 (3 HSPs)
chr1 (52-131)||(3231946-3232025)
chr1 (50-126)||(52432654-52432730)
chr1 (83-132)||(45136757-45136806)
[»] chr6 (2 HSPs)
chr6 (52-98)||(32047195-32047241)
chr6 (52-116)||(32342603-32342667)
[»] chr5 (1 HSPs)
chr5 (52-129)||(972874-972951)


Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 6138617 - 6138395
Alignment:
Q  1 ctggacttctatttcttatgcttgtttattcacgagtatttgtttattgcttgttgaatgaatgagttgaataaggttgatgttcttgtgatgaaaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6138617 ctggacttctatttcttatgcttgtttattcacgagtatttgtttattgcttgttgaatgaatgagttgaataaggttgatgttcttgtgatgaaaatag 6138518  T
Q  101 caattgattgaaagaataaagatgaagaaaataggtttattgtttagtcgtaagtttcaataaaataatttgtatttgtgatcactattttaatttttct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6138517 caattgattgaaagaataaagatgaagaaaataggtttattgtttagtcgtaagtttcaataaaataatttgtatttgtgatcactattttaatttttct 6138418  T
Q  201 gatggactatgcaatgtaatatc 223  Q
    |||||||||||||||||||||||    
T  6138417 gatggactatgcaatgtaatatc 6138395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 53 - 223
Target Start/End: Original strand, 13283849 - 13284019
Alignment:
Q  53 gttgaatgaatgagttgaataaggttgatgttcttgtgatgaaaatagcaattgattgaaagaataaagatgaagaaaataggtttattgtttagtcgta 152  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13283849 gttgaatgaatgagttgaataagtttgatgttcttgtgatgaaaatagcaattgattgaaagaataaagatgaagaaaataggtttattgtttagtcgta 13283948  T
Q  153 agtttcaataaaataatttgtatttgtgatcactattttaatttttctgatggactatgcaatgtaatatc 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13283949 agtttcaataaaataatttgtatttgtgatcactattttaatttttctgatggactatgcaatgtaatatc 13284019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 131
Target Start/End: Complemental strand, 21570435 - 21570356
Alignment:
Q  52 tgttgaatgaatgagttgaataaggttgatgttcttgtgatgaaaatagcaattgattgaaagaataaagatgaagaaaa 131  Q
    ||||||| |||| || |||| ||| |||||||||||||||||||||||| |||  |||| |||||||||||| |||||||    
T  21570435 tgttgaacgaattagatgaaaaagtttgatgttcttgtgatgaaaatagtaatcaattgtaagaataaagataaagaaaa 21570356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 13283479 - 13283508
Alignment:
Q  1 ctggacttctatttcttatgcttgtttatt 30  Q
    ||||||||||||||||||||||||||||||    
T  13283479 ctggacttctatttcttatgcttgtttatt 13283508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 131
Target Start/End: Complemental strand, 16576315 - 16576236
Alignment:
Q  52 tgttgaatgaatgagttgaataaggttgatgttcttgtgatgaaaatagcaattgattgaaagaataaagatgaagaaaa 131  Q
    ||||||||||| ||| |||| ||| |||||||||||| || |||||| | ||||||||| ||||| |||| |||||||||    
T  16576315 tgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaattgattgtaagaaaaaaggtgaagaaaa 16576236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 131
Target Start/End: Complemental strand, 3232025 - 3231946
Alignment:
Q  52 tgttgaatgaatgagttgaataaggttgatgttcttgtgatgaaaatagcaattgattgaaagaataaagatgaagaaaa 131  Q
    ||||||||||||||  |||| ||| ||| |||||||| |||||||||||||| |||||| ||  ||||| ||||||||||    
T  3232025 tgttgaatgaatgacatgaagaagtttgttgttcttgagatgaaaatagcaactgattgtaaagataaacatgaagaaaa 3231946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 126
Target Start/End: Complemental strand, 52432730 - 52432654
Alignment:
Q  50 cttgttgaatgaatgagttgaataaggttgatgttcttgtgatgaaaatagcaattgattgaaagaataaagatgaa 126  Q
    |||||| |||||| ||| |||| ||| || ||||||||| ||||||||| | ||||||||  |||||||||||||||    
T  52432730 cttgttaaatgaaggagatgaagaagtttaatgttcttgagatgaaaatggtaattgattataagaataaagatgaa 52432654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 45136757 - 45136806
Alignment:
Q  83 ttcttgtgatgaaaatagcaattgattgaaagaataaagatgaagaaaat 132  Q
    |||||| ||||||||||  || |||||| |||||||||||||||||||||    
T  45136757 ttcttgcgatgaaaataataactgattgtaagaataaagatgaagaaaat 45136806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 32047241 - 32047195
Alignment:
Q  52 tgttgaatgaatgagttgaataaggttgatgttcttgtgatgaaaat 98  Q
    ||||||||||||||| |||| ||| |||||||||||| |||||||||    
T  32047241 tgttgaatgaatgagatgaagaagtttgatgttcttgagatgaaaat 32047195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 32342667 - 32342603
Alignment:
Q  52 tgttgaatgaatgagttgaataaggttgatgttcttgtgatgaaaatagcaattgattgaaagaa 116  Q
    ||||||||||||||| |||| ||| |||||||| ||| |||||||||   ||||||||| |||||    
T  32342667 tgttgaatgaatgagatgaaaaagtttgatgtttttgagatgaaaatgataattgattgtaagaa 32342603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 972951 - 972874
Alignment:
Q  52 tgttgaatgaatgagttgaataaggttgatgttcttgtgatgaaaatagcaattgattgaaagaataaagatgaagaa 129  Q
    |||| |||||| ||| |||| ||  ||||| |||||||||||||||| |||| |||||  || |||||||||||||||    
T  972951 tgttaaatgaaagagatgaagaaatttgattttcttgtgatgaaaatggcaactgatttcaaaaataaagatgaagaa 972874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University