View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11690_low_25 (Length: 227)
Name: NF11690_low_25
Description: NF11690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11690_low_25 |
 | |
|
| [»] scaffold0024 (1 HSPs) |
| | |
|
| [»] scaffold0026 (1 HSPs) |
| | |
|
| [»] scaffold0073 (1 HSPs) |
| | |
|
| [»] scaffold0262 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 12 - 208
Target Start/End: Original strand, 45285174 - 45285371
Alignment:
| Q |
12 |
agagaagaagccatagtggggctccgcgaatcaagtggtggcatttaaagggtgaaaaacaacagattttccaagacaagatcttagagggaggtttcaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
45285174 |
agagaagaagccatagtggggctccgcgaattaagtggtggcatttaaagggtgaaaaacaacatattttccaagacaagatcttagagggaggtttcaa |
45285273 |
T |
|
| Q |
112 |
gcaacaacaaagaagcactaatgatatgtgggacaagatggcacatgaggtt-aaaaagtagcaaaagcgacattgggagagtcaagaggttttggac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
45285274 |
gcaacaacaaagaagcactaatgatatgtgggacaagatggcacatgaggttaaaaaagtagcaaaagcgacattgggagagttaagaggttttggac |
45285371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 28 - 210
Target Start/End: Complemental strand, 33351924 - 33351741
Alignment:
| Q |
28 |
tggggctccgcgaatcaagtggtggcatttaaagggtgaaaaacaacagattttccaagacaagatcttagagggaggtttcaagcaacaacaaagaagc |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||| |||||| ||||||| ||||||||||| |||| ||||| ||| |||| |
|
|
| T |
33351924 |
tggggctccgcgaatcaagtggtggcatttaaagggtgaaaaactaaggatattccaatacaagatattagagggaggcttcaggcaaccacatggaagt |
33351825 |
T |
|
| Q |
128 |
actaatgatatgtgggacaagatggcacatgaggttaaaaa-gtagcaaaagcgacattgggagagtcaagaggttttggacct |
210 |
Q |
| |
|
| |||||||||||||| | ||||||||||||| ||||||| |||||||||| ||| |||||||| || |||||||||||||| |
|
|
| T |
33351824 |
gcaaatgatatgtgggagaggatggcacatgagattaaaaaggtagcaaaagagacgttgggagaatctcgaggttttggacct |
33351741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 40 - 209
Target Start/End: Complemental strand, 45877993 - 45877824
Alignment:
| Q |
40 |
aatcaagtggtggcatttaaagggtgaaaaacaacagattttccaagacaagatcttagagggaggtttcaagcaacaacaaagaagcactaatgatatg |
139 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||| |||||||||| ||||||| ||||||||||| |||| ||| | |||| ||| | ||| ||||| |
|
|
| T |
45877993 |
aatcaagtggtggcatttgaagggtgaagaacaaaggattttccaacacaagat-ttagagggaggattcaggcagccacaagaaagtgcaaattatatg |
45877895 |
T |
|
| Q |
140 |
tgggacaagatggcacatgaggtta-aaaagtagcaaaagcgacattgggagagtcaagaggttttggacc |
209 |
Q |
| |
|
|||||| |||||| ||||| | ||| |||||||||||||| || |||||||| |||| | |||||||||| |
|
|
| T |
45877894 |
tgggaccagatggtacatgtgattagaaaagtagcaaaagaaactttgggagaatcaaaatgttttggacc |
45877824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 42233623 - 42233543
Alignment:
| Q |
131 |
aatgatatgtgggacaagatggcacatgaggtta-aaaagtagcaaaagcgacattgggagagtcaagaggttttggacct |
210 |
Q |
| |
|
||||||| |||| |||||||| || ||||| ||| |||||||||||||| |||| ||| ||| | || ||||||||||||| |
|
|
| T |
42233623 |
aatgatacgtggaacaagatgacatatgagattagaaaagtagcaaaagagacactggaagaattaataggttttggacct |
42233543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 5e-52; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 12 - 210
Target Start/End: Original strand, 26132 - 26331
Alignment:
| Q |
12 |
agagaagaagccatagtggggctccgcgaatcaagtggtggcatttaaagggtgaaaaacaacagattttccaagacaagatcttagagggaggtttcaa |
111 |
Q |
| |
|
|||||||||| || || ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||| |||||||||| |
|
|
| T |
26132 |
agagaagaagacacagcggggctccgcgaatcaagtggtgacatttaaagggtgaaaaacaaagaattttccaacacaagatcttaggaggaggtttcag |
26231 |
T |
|
| Q |
112 |
gcaacaacaaagaagcactaatgatatgtgggacaagatggcacatgaggttaaaa-agtagcaaaagcgacattgggagagtcaagaggttttggacct |
210 |
Q |
| |
|
||||| | || ||||| | ||||||||||||||||||||| |||||||| |||||| |||||||||| ||| |||||||| |||||||||||||||||| |
|
|
| T |
26232 |
gcaaccataaggaagcgcaaatgatatgtgggacaagatgacacatgagattaaaatagtagcaaaaaagacgttgggagaatcaagaggttttggacct |
26331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 11 - 210
Target Start/End: Complemental strand, 1289664 - 1289464
Alignment:
| Q |
11 |
gagagaagaagccatagtggggctccgcgaatcaagtggtggcatttaaagggtgaaaaacaacagattttccaagacaagatcttagagggaggtttca |
110 |
Q |
| |
|
||||||||||| || | ||||||||||||| |||||||||||||||||||||||||||||| | ||| |||||| ||||||| ||||||||||| | || |
|
|
| T |
1289664 |
gagagaagaagtcaaaatggggctccgcgagtcaagtggtggcatttaaagggtgaaaaactaaggatattccaacacaagatattagagggaggctcca |
1289565 |
T |
|
| Q |
111 |
agcaacaacaaagaagcactaatgatatgtgggacaagatggcacatgaggttaaaaa-gtagcaaaagcgacattgggagagtcaagaggttttggacc |
209 |
Q |
| |
|
|||| ||| ||||| | ||| |||||||||| | |||| |||||||| ||||||| |||||||||| ||| |||||||| || ||||||||||||| |
|
|
| T |
1289564 |
gtcaactacatggaagcgcaaataatatgtgggagaggatgacacatgagattaaaaaggtagcaaaagagacgttgggagaatctcgaggttttggacc |
1289465 |
T |
|
| Q |
210 |
t |
210 |
Q |
| |
|
| |
|
|
| T |
1289464 |
t |
1289464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 210
Target Start/End: Complemental strand, 2077607 - 2077408
Alignment:
| Q |
12 |
agagaagaagccatagtggggctccgcgaatcaagtggtggcatttaaagggtgaaaaacaacagattttccaagacaagatcttagagggaggtttcaa |
111 |
Q |
| |
|
|||||||||| || | |||||||||||||||||||||| | ||||||||||||||||||| | ||| |||||| ||||||| |||||||||| |||| |
|
|
| T |
2077607 |
agagaagaagtcaaaatggggctccgcgaatcaagtggcgacatttaaagggtgaaaaactaaggatattccaacacaagatattagagggagacttcag |
2077508 |
T |
|
| Q |
112 |
gcaacaacaaagaagcactaatgatatgtgggacaagatggcacatgaggttaaaaa-gtagcaaaagcgacattgggagagtcaagaggttttggacct |
210 |
Q |
| |
|
|| || || |||| | |||||||||||||| | ||||||||||||| ||||||| |||||||||| ||| |||||| | || |||||||||||||| |
|
|
| T |
2077507 |
gctaccacgtggaagtgcaaatgatatgtgggagaggatggcacatgagattaaaaaggtagcaaaagagacgttgggaaaatctcgaggttttggacct |
2077408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 210
Target Start/End: Original strand, 30345260 - 30345340
Alignment:
| Q |
131 |
aatgatatgtgggacaagatggcacatgaggtta-aaaagtagcaaaagcgacattgggagagtcaagaggttttggacct |
210 |
Q |
| |
|
|||||||||||| |||||||| || ||||| ||| |||||||||||||| |||| ||| ||| | || ||||||||||||| |
|
|
| T |
30345260 |
aatgatatgtggaacaagatgacatatgagattagaaaagtagcaaaagagacactggaagaattaataggttttggacct |
30345340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 169
Target Start/End: Original strand, 37122761 - 37122872
Alignment:
| Q |
58 |
aaagggtgaaaaacaacagattttccaagacaagatcttagagggaggtttcaagcaacaacaaagaagcactaatgatatgtgggacaagatggcacat |
157 |
Q |
| |
|
||||||||| |||||| |||||| ||| | ||||| |||||||| ||||||||| | |||| ||||||| | | ||||||| |||||||||||| || |
|
|
| T |
37122761 |
aaagggtgagaaacaaaggatttttcaacataagattttagagggcaatttcaagcagctacaatgaagcacaatttatatgtgagacaagatggcaaat |
37122860 |
T |
|
| Q |
158 |
gaggttaaaaag |
169 |
Q |
| |
|
|| |||| |||| |
|
|
| T |
37122861 |
gatgttagaaag |
37122872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 205
Target Start/End: Original strand, 21913445 - 21913598
Alignment:
| Q |
52 |
gcatttaaagggtgaaaaacaacagattttccaagacaagatcttagagggaggtttcaagcaacaacaaagaagcactaatgatatgtgggacaagatg |
151 |
Q |
| |
|
|||||| |||||||||||| || |||||||||| |||| || ||||| |||||||||| || |||| ||||| | ||||||| |||||| ||||| |
|
|
| T |
21913445 |
gcatttgaagggtgaaaaataaatgattttccaaaacaatattttaga-ggaggtttcagtcaggcacaaggaagcgcaaatgataagtgggataagatt |
21913543 |
T |
|
| Q |
152 |
gcacatgaggtta-aaaagtagcaaaagcgacattgggagagtcaagaggttttg |
205 |
Q |
| |
|
|||| || ||| |||||||||||||| || |||||||| |||||| |||||| |
|
|
| T |
21913544 |
acacaagatattagaaaagtagcaaaagagaagttgggagaatcaagaagttttg |
21913598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 8e-45; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 12 - 210
Target Start/End: Complemental strand, 51449839 - 51449640
Alignment:
| Q |
12 |
agagaagaagccatagtggggctccgcgaatcaagtggtggcatttaaagggtgaaaaacaacagattttccaagacaagatcttagagggaggtttcaa |
111 |
Q |
| |
|
|||||||||| || | |||||||||||||||||||||||||||||||||||||||||||| | ||| |||||| ||||||| ||||||||||| |||| |
|
|
| T |
51449839 |
agagaagaagtcaaaatggggctccgcgaatcaagtggtggcatttaaagggtgaaaaactaaggatattccaacacaagatattagagggaggcttcag |
51449740 |
T |
|
| Q |
112 |
gcaacaacaaagaagcactaatgatatgtgggacaagatggcacatgaggttaaaaa-gtagcaaaagcgacattgggagagtcaagaggttttggacct |
210 |
Q |
| |
|
||||| ||| |||| | |||||||||||||| | ||||||||||||| ||||||| |||||||||| ||| |||||||| || |||||||||||||| |
|
|
| T |
51449739 |
gcaaccacatggaagtgcaaatgatatgtgggagaggatggcacatgagattaaaaaggtagcaaaagagacgttgggagaatctcgaggttttggacct |
51449640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 12 - 210
Target Start/End: Original strand, 9257250 - 9257448
Alignment:
| Q |
12 |
agagaagaagccatagtggggctccgcgaatcaagtggtggcatttaaagggtgaaaaacaacagattttccaagacaagatcttagagggaggtttcaa |
111 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||||| || ||||| ||||||||||||||| |||||||||| ||||||||||| |||| ||||| | |
|
|
| T |
9257250 |
agagaagaagccatagcggacctccgtgaatcaagtgatgacattttaagggtgaaaaacaaaggattttccaacacaagatcttataggg-ggttttag |
9257348 |
T |
|
| Q |
112 |
gcaacaacaaagaagcactaatgatatgtgggacaagatggcacatgaggtt-aaaaagtagcaaaagcgacattgggagagtcaagaggttttggacct |
210 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||| |||||||| || | | ||||||||||| |
|
|
| T |
9257349 |
ataaccacatggaagcactaatgatatgtgggacaagatggcacatgagattaaaaaagtagctaaagcgacgttgggagaatctataagttttggacct |
9257448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 210
Target Start/End: Original strand, 52137337 - 52137536
Alignment:
| Q |
12 |
agagaagaagccatagtggggctccgcgaatcaagtggtggcatttaaagggtgaaaaacaacagattttccaagacaagatcttagagggaggtttcaa |
111 |
Q |
| |
|
|||||||||| || | ||| |||||||||||||||||||||||||||||||||||||||| | ||| |||||| ||||||| ||||||||||| |||| |
|
|
| T |
52137337 |
agagaagaagtcaaaatggagctccgcgaatcaagtggtggcatttaaagggtgaaaaactaaggatattccaacacaagatattagagggaggcttcag |
52137436 |
T |
|
| Q |
112 |
gcaacaacaaagaagcactaatgatatgtgggacaagatggcacatgaggttaaaaa-gtagcaaaagcgacattgggagagtcaagaggttttggacct |
210 |
Q |
| |
|
| ||| ||| |||| | |||||||||||||| | ||||||| ||||| ||||||| |||||||||| ||| |||||||| || |||||||||||||| |
|
|
| T |
52137437 |
gtaaccacatggaagtgcaaatgatatgtgggagaggatggcaaatgagattaaaaaggtagcaaaagagacgttgggagaatctcgaggttttggacct |
52137536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 27 - 210
Target Start/End: Original strand, 27915828 - 27916012
Alignment:
| Q |
27 |
gtggggctccgcgaatcaagtggtggcatttaaagggtgaaaaacaacagattttccaagacaagatcttagagggaggtttcaagcaacaacaaagaag |
126 |
Q |
| |
|
||||| ||||| | || |||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||| |||| | ||||| |||| |||| |
|
|
| T |
27915828 |
gtgggactccgtgtataaagtggtggcatttaaagggtgaaaaacaatggattttccaacacaagattatagagggaagttttaggcaaccacaaggaag |
27915927 |
T |
|
| Q |
127 |
cactaatgatatgtgggacaagatggcacatgaggtt-aaaaagtagcaaaagcgacattgggagagtcaagaggttttggacct |
210 |
Q |
| |
|
||| |||| ||||||| |||||||| |||||||| || |||| |||| ||||| || |||| ||| ||||||||||||||||| |
|
|
| T |
27915928 |
cacaaatggtatgtggaacaagatgtcacatgagtttgaaaaggtagtaaaagagatgttggtagaaccaagaggttttggacct |
27916012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 210
Target Start/End: Original strand, 74280 - 74478
Alignment:
| Q |
12 |
agagaagaagccatagtggggctccgcgaatcaagtggtggcatttaaagggtgaaaaacaacagattttccaagacaagatcttagagggaggtttcaa |
111 |
Q |
| |
|
|||||||||| ||||| |||||| || |||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||| |||||| |
|
|
| T |
74280 |
agagaagaagtcatagcggggctttgctaatcaattggtggcatttaaagggtgaaaaacaaagaattttccaacacaagatcttaaagggatgtttcat |
74379 |
T |
|
| Q |
112 |
gcaacaacaaagaagcactaatgatatgtgggacaagatggcacatgaggttaaa-aagtagcaaaagcgacattgggagagtcaagaggttttggacct |
210 |
Q |
| |
|
||||| |||| ||||| |||| ||||||||||| ||||||||||||||| ||||| ||||||| ||||| || |||| ||| ||||||| |||||||||| |
|
|
| T |
74380 |
gcaaccacaaggaagcgctaaagatatgtgggagaagatggcacatgagattaaagaagtagc-aaagcaacgttggaagattcaagagattttggacct |
74478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 210
Target Start/End: Original strand, 6080595 - 6080794
Alignment:
| Q |
12 |
agagaagaagccatagtggggctccgcgaatcaagtggtggcatttaaagggtgaaaaacaacagattttccaagacaagatcttagagggaggtttcaa |
111 |
Q |
| |
|
|||||||||| || | |||||||||||||||||||||||||||||||||||||||||||| | ||| |||||| ||||||| ||||||||||| |||| |
|
|
| T |
6080595 |
agagaagaagtcaaactggggctccgcgaatcaagtggtggcatttaaagggtgaaaaactaaggatattccaacacaagatattagagggaggcttcag |
6080694 |
T |
|
| Q |
112 |
gcaacaacaaagaagcactaatgatatgtgggacaagatggcacatgaggttaaaaa-gtagcaaaagcgacattgggagagtcaagaggttttggacct |
210 |
Q |
| |
|
||||| ||| |||| | |||||||||||||| | ||||||||||||| ||||||| |||||||||| ||| |||||||| | |||||||||||||| |
|
|
| T |
6080695 |
gcaaccacatggaagtgcaaatgatatgtgggagaggatggcacatgagattaaaaaggtagcaaaagagacgttgggagaatttcgaggttttggacct |
6080794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 29 - 208
Target Start/End: Complemental strand, 20429755 - 20429575
Alignment:
| Q |
29 |
ggggctccgcgaatcaagtggtggcatttaaagggtgaaaaacaacagattttccaagacaagatcttagagggaggtttcaagcaacaacaaagaagca |
128 |
Q |
| |
|
||||||| | |||||||||||| |||||||||||||||||||||| ||| |||||| || |||| |||||||||||||||| ||||| ||| ||||| |
|
|
| T |
20429755 |
ggggctctgtgaatcaagtggttgcatttaaagggtgaaaaacaaaggatcttccaacacgagatattagagggaggtttcaggcaaccacatggaagcg |
20429656 |
T |
|
| Q |
129 |
ctaatgatatgtgggacaagatggcacatgaggtt-aaaaagtagcaaaagcgacattgggagagtcaagaggttttggac |
208 |
Q |
| |
|
|| ||||||||||||| | |||||| ||||| || | || || ||||||| ||| |||||||| || |||||||||||| |
|
|
| T |
20429655 |
ctcatgatatgtgggagaggatggctcatgaaattcagaaggtggcaaaagagacgttgggagaatcttgaggttttggac |
20429575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 28 - 210
Target Start/End: Complemental strand, 48624646 - 48624463
Alignment:
| Q |
28 |
tggggctccgcgaatcaagtggtggcatttaaagggtgaaaaacaacagattttccaagacaagatcttagagggaggtttcaagcaacaacaaagaagc |
127 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| | ||| |||||| ||||||| ||||||||||| |||| ||||| ||| ||||| |
|
|
| T |
48624646 |
tgggcctccgcgaatcaagtggtggcatttaaagggtgaaaaactagggatattccaacacaagatattagagggaggcttcaggcaaccacatggaagc |
48624547 |
T |
|
| Q |
128 |
actaatgatatgtgggacaagatggcacatgaggttaaaaa-gtagcaaaagcgacattgggagagtcaagaggttttggacct |
210 |
Q |
| |
|
| |||||||||||||| | ||||||||||||| ||||||| |||||||||| ||| |||||||| || |||||||||||||| |
|
|
| T |
48624546 |
gcaaatgatatgtgggagaggatggcacatgagattaaaaaggtagcaaaagagacgttgggagaatctcgaggttttggacct |
48624463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 40 - 210
Target Start/End: Complemental strand, 23908409 - 23908238
Alignment:
| Q |
40 |
aatcaagtggtggcatttaaagggtgaaaaacaacagattttccaagacaagatcttagagggaggtttcaagcaacaacaaagaagcactaatgatatg |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||| |||||| ||||||| ||||||||||| |||| ||||| ||| |||| | ||||||||| |
|
|
| T |
23908409 |
aatcaagtggtggcatttaaagggtgaaaaactaaggatattccaacacaagatattagagggaggcttcaggcaaccacatggaagtgcaaatgatatg |
23908310 |
T |
|
| Q |
140 |
tgggacaagatggcacatgaggttaaaaa-gtagcaaaagcgacattgggagagtcaagaggttttggacct |
210 |
Q |
| |
|
||||| | ||||||||||||| ||||||| ||| |||||| ||| |||||||| || |||||||||||||| |
|
|
| T |
23908309 |
tgggagaggatggcacatgagattaaaaaggtaacaaaagagacgttgggagaatctcgaggttttggacct |
23908238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 16002074 - 16001919
Alignment:
| Q |
12 |
agagaagaagccatagtggggctccgcgaatcaagtggtggcatttaaagggtgaaaaacaaca--------gattttccaagacaagatcttagaggga |
103 |
Q |
| |
|
|||||||| ||||||| |||||||| ||||| ||||||||||||||||||| ||||||| || | |||||||||| ||||||||||||||| | |
|
|
| T |
16002074 |
agagaagaggccatagcggggctccacgaat-aagtggtggcatttaaaggctgaaaaaaaaaaaaaaaaaggattttccaacacaagatcttagaggaa |
16001976 |
T |
|
| Q |
104 |
ggtttcaagcaacaacaaagaagcactaatgatatgtgggacaagatggcacatgag |
160 |
Q |
| |
|
||||||| |||| |||| ||||| ||||||||||||||||||||||| || ||||| |
|
|
| T |
16001975 |
ggtttcaggcaaacacaaggaagctctaatgatatgtgggacaagatgacaaatgag |
16001919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 35671624 - 35671422
Alignment:
| Q |
10 |
agagagaagaagccatagtggggctccgcgaatcaagtggtggcatttaaagggtgaaaaacaacagattttccaagacaagatcttagagggaggtttc |
109 |
Q |
| |
|
|||| |||||||||| | ||||| ||| |||||||||||||| ||||| |||| |||||||||| |||||||||| |||| ||||||||||| ||| || |
|
|
| T |
35671624 |
agagcgaagaagccacaatggggatccacgaatcaagtggtgacatttgaaggatgaaaaacaaatgattttccaacacaaaatcttagagggtggtgtc |
35671525 |
T |
|
| Q |
110 |
aagcaacaacaaagaagcactaatgatatgtgggacaagatggcacatgaggtta-aaaagtagcaaaagcgacattgggagagtcaagaggttttggac |
208 |
Q |
| |
|
| || | |||| |||| | ||||||||||||| ||| || |||||||| ||| |||| ||||||||| || || | | | |||||||| ||||||| |
|
|
| T |
35671524 |
atacacccacaagtaagcgcaaatgatatgtgggccaaaatcacacatgagattagaaaaatagcaaaagaaacgttagtaaaatcaagaggctttggac |
35671425 |
T |
|
| Q |
209 |
ctg |
211 |
Q |
| |
|
||| |
|
|
| T |
35671424 |
ctg |
35671422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 88 - 210
Target Start/End: Complemental strand, 27452216 - 27452093
Alignment:
| Q |
88 |
caagatcttagagggaggtttcaagcaacaacaaagaagcactaatgatatgtgggacaagatggcacatgaggtta-aaaagtagcaaaagcgacattg |
186 |
Q |
| |
|
|||||| |||||||||||||||| ||||| ||| ||||| |||||||||||||||| | |||||| || ||| ||| || || ||||||| ||| ||| |
|
|
| T |
27452216 |
caagatattagagggaggtttcaggcaaccacatggaagcgctaatgatatgtgggagatgatggctcacgagattaggaaggtggcaaaagagacgttg |
27452117 |
T |
|
| Q |
187 |
ggagagtcaagaggttttggacct |
210 |
Q |
| |
|
||||| || ||||||||||||||| |
|
|
| T |
27452116 |
ggagaatctagaggttttggacct |
27452093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 210
Target Start/End: Original strand, 55557711 - 55557791
Alignment:
| Q |
131 |
aatgatatgtgggacaagatggcacatgaggtta-aaaagtagcaaaagcgacattgggagagtcaagaggttttggacct |
210 |
Q |
| |
|
||||||| |||| |||||||| || ||||| ||| |||||||||||||| |||| ||| ||| | || ||||||||||||| |
|
|
| T |
55557711 |
aatgatacgtggaacaagatgacatatgagattagaaaagtagcaaaagagacactggaagaattaataggttttggacct |
55557791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 12 - 210
Target Start/End: Complemental strand, 49349547 - 49349348
Alignment:
| Q |
12 |
agagaagaagccatagtggggctccgcgaatcaagtggtggcatttaaagggtgaaaaacaacagattttccaagacaagatcttagagggaggtttcaa |
111 |
Q |
| |
|
|||||||||| || | |||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||| ||||||| ||||||||||| |||| |
|
|
| T |
49349547 |
agagaagaagtcaaaatggggctccgtgaatcaagtggtggcatttaaagggtgaaaaactaaggatgttccaacacaagatattagagggaggcttcag |
49349448 |
T |
|
| Q |
112 |
gcaacaacaaagaagcactaatgatatgtgggacaagatggcacatgaggttaaaaa-gtagcaaaagcgacattgggagagtcaagaggttttggacct |
210 |
Q |
| |
|
||||| ||| |||| | | |||||||||||| | ||||||||||||| ||||||| |||||||||| ||| |||||||| || |||||||||||||| |
|
|
| T |
49349447 |
gcaaccacatggaagtgcaattgatatgtgggagaggatggcacatgagattaaaaaggtagcaaaagagacgttgggagaatctcgaggttttggacct |
49349348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 210
Target Start/End: Original strand, 8178939 - 8179138
Alignment:
| Q |
12 |
agagaagaagccatagtggggctccgcgaatcaagtggtggcatttaaagggtgaaaaacaacagattttccaagacaagatcttagagggaggtttcaa |
111 |
Q |
| |
|
|||||||||| || | ||||| |||||||||||||||||||||||||||||||||||||| | ||| |||||| ||| ||| ||||||||||| |||| |
|
|
| T |
8178939 |
agagaagaagtcaaaatggggatccgcgaatcaagtggtggcatttaaagggtgaaaaactaaggatattccaacacacgatattagagggaggcttcag |
8179038 |
T |
|
| Q |
112 |
gcaacaacaaagaagcactaatgatatgtgggacaagatggcacatgaggttaaaaa-gtagcaaaagcgacattgggagagtcaagaggttttggacct |
210 |
Q |
| |
|
| ||| || ||||| | |||||||||||||| | ||||||||||||| ||||||| |||||||||| ||| |||||||| || |||||||||||||| |
|
|
| T |
8179039 |
gtaaccgcatggaagcgcaaatgatatgtgggagaggatggcacatgagattaaaaaggtagcaaaagagacgttgggagaatctcgaggttttggacct |
8179138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 210
Target Start/End: Original strand, 16291741 - 16291939
Alignment:
| Q |
12 |
agagaagaagccatagtggggctccgcgaatcaagtggtggcatttaaagggtgaaaaacaacagattttccaagacaagatcttagagggaggtttcaa |
111 |
Q |
| |
|
|||||||||| || | |||| ||||||||||||||||||||||||||||||||||||||| | ||| |||||| |||| || ||||||||||| |||| |
|
|
| T |
16291741 |
agagaagaagtcaaaatgggactccgcgaatcaagtggtggcatttaaagggtgaaaaactaaggatattccaacacaatatattagagggaggcttcag |
16291840 |
T |
|
| Q |
112 |
gcaacaacaaagaagcactaatgatatgtgggacaagatggcacatgaggttaaaaa-gtagcaaaagcgacattgggagagtcaagaggttttggacct |
210 |
Q |
| |
|
||||| ||| ||||| | ||||||||||| || ||| ||||||||||| ||||||| |||||||||| ||| |||||||| || ||||||||||||| |
|
|
| T |
16291841 |
gcaaccacatggaagcgcaaatgatatgtgagagaag-tggcacatgagattaaaaaggtagcaaaagagacgttgggagaatctcaaggttttggacct |
16291939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 210
Target Start/End: Complemental strand, 7130955 - 7130871
Alignment:
| Q |
127 |
cactaatgatatgtgggacaagatggcacatgaggtta-aaaagtagcaaaagcgacattgggagagtcaagaggttttggacct |
210 |
Q |
| |
|
|||||||| ||| |||||||||||| |||||| | ||| |||||||| ||||| || |||||||| |||||||||||||||||| |
|
|
| T |
7130955 |
cactaatgttatatgggacaagatgacacatgggattacaaaagtagtaaaagggatgttgggagaatcaagaggttttggacct |
7130871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 210
Target Start/End: Original strand, 36543300 - 36543499
Alignment:
| Q |
12 |
agagaagaagccatagtggggctccgcgaatcaagtggtggcatttaaagggtgaaaaacaacagattttccaagacaagatcttagagggaggtttcaa |
111 |
Q |
| |
|
|||||||||| || | |||||||| |||||||||||||||||||||||||||||||||| | ||| |||||| ||||||| ||||||||||| |||| |
|
|
| T |
36543300 |
agagaagaagtcaaaatggggctctgcgaatcaagtggtggcatttaaagggtgaaaaattaaggatattccaacacaagatattagagggaggcttcag |
36543399 |
T |
|
| Q |
112 |
gcaacaacaaagaagcactaatgatatgtgggacaagatggcacatgaggttaaaaa-gtagcaaaagcgacattgggagagtcaagaggttttggacct |
210 |
Q |
| |
|
|||| ||| |||| | |||||||||||||| | |||| |||||||| ||||||| |||||||||| ||| |||||||| || |||||||||||||| |
|
|
| T |
36543400 |
gcaaacacatggaagtgcaaatgatatgtgggagaggatgacacatgagattaaaaaggtagcaaaagagacgttgggagaatctcgaggttttggacct |
36543499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 12 - 210
Target Start/End: Complemental strand, 15217403 - 15217204
Alignment:
| Q |
12 |
agagaagaagccatagtggggctccgcgaatcaagtggtggcatttaaagggtgaaaaacaacagattttccaagacaagatcttagagggaggtttcaa |
111 |
Q |
| |
|
|||||||| ||| ||| |||||| || |||||||||||||||||||||||||||| ||||| ||| |||| | ||||||| |||||||||||||||| |
|
|
| T |
15217403 |
agagaagatgccgtagcggggcttcgtgaatcaagtggtggcatttaaagggtgaccaacaaaggatattccgacacaagatattagagggaggtttcag |
15217304 |
T |
|
| Q |
112 |
gcaacaacaaagaagcactaatgatatgtgggacaagatggcacatgaggttaa-aaagtagcaaaagcgacattgggagagtcaagaggttttggacct |
210 |
Q |
| |
|
| ||| ||| |||||||||||||||||||||| | |||||| |||||| |||| || || | ||||| ||| |||||||| || ||||||||| ||||| |
|
|
| T |
15217303 |
gaaaccacatggaagcactaatgatatgtgggagaggatggctcatgagattaagaaggtggaaaaagagacgttgggagaatctagaggttttagacct |
15217204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 28 - 208
Target Start/End: Original strand, 13587875 - 13588054
Alignment:
| Q |
28 |
tggggctccgcgaatcaagtggtggcatttaaagggtgaaaaacaacagattttccaagacaagatcttagagggaggtttcaagcaacaacaaagaagc |
127 |
Q |
| |
|
|||||||| | ||||||||| |||||||||||||| |||||| ||| |||||||||| ||||||||||||||||||||| | ||||| |||| |||| |
|
|
| T |
13587875 |
tggggctctgtgaatcaagtagtggcatttaaagg-tgaaaa-caaaggattttccaacacaagatcttagagggaggttgtaggcaaccacaaggaagt |
13587972 |
T |
|
| Q |
128 |
actaatgatatgtgggacaagatggcacatg-aggttaaaaagtagcaaaagcgacattgggagagtcaagaggttttggac |
208 |
Q |
| |
|
|||||||| ||||||||||||| ||||| | |||||||||| |||||| ||| || | ||| |||||||||||||||| |
|
|
| T |
13587973 |
gaaaatgatatatgggacaagatggaacatgaaatttaaaaagtaacaaaagagacgtttgaagaatcaagaggttttggac |
13588054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 159
Target Start/End: Original strand, 28282031 - 28282149
Alignment:
| Q |
41 |
atcaagtggtggcatttaaagggtgaaaaacaacagattttccaagacaagatcttagagggaggtttcaagcaacaacaaagaagcactaatgatatgt |
140 |
Q |
| |
|
||||||||||||| ||| |||||||||||| || |||||| ||| |||| ||||||||||||||||||| || |||| ||| ||| ||||||| || |
|
|
| T |
28282031 |
atcaagtggtggcgtttgaagggtgaaaaataaaggatttttcaacacaatatcttagagggaggtttcagtcatgtacaaggaatcacaaatgatacgt |
28282130 |
T |
|
| Q |
141 |
gggacaagatggcacatga |
159 |
Q |
| |
|
|| | |||||||||||||| |
|
|
| T |
28282131 |
ggaataagatggcacatga |
28282149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 32 - 206
Target Start/End: Original strand, 78069 - 78243
Alignment:
| Q |
32 |
gctccgcgaatcaagtggtggcatttaaagggtgaaaaacaacagattttccaagacaagatcttagagggaggtttcaagcaacaacaaagaagcacta |
131 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||||||||| | || |||||| ||||||||||||||||||||||| || | || |||||| | |
|
|
| T |
78069 |
gctccacggatcaagtggtggcatttgaagggtgaaaaacaaga-atcttccaacacaagatcttagagggaggtttcggtcaggcataagaaagcacaa |
78167 |
T |
|
| Q |
132 |
atgatatgtgggacaagatggcacatgaggtta-aaaagtagcaaaagcgacattgggagagtcaagaggttttgg |
206 |
Q |
| |
|
||||||||||||||||||||||||| || ||| |||||||||||||| || |||||||| ||| |||||||||| |
|
|
| T |
78168 |
atgatatgtgggacaagatggcacaagatattagaaaagtagcaaaagaaacgttgggagaatcacgaggttttgg |
78243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0073 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0073
Description:
Target: scaffold0073; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 207
Target Start/End: Complemental strand, 27556 - 27479
Alignment:
| Q |
131 |
aatgatatgtgggacaagatggcacatgaggtta-aaaagtagcaaaagcgacattgggagagtcaagaggttttgga |
207 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||||||||| ||| |||| ||||| | ||||||||||||| |
|
|
| T |
27556 |
aatgatatgtgggacaagatgacacatgaggttagaaaagtagcagaagaatcattaggagaataaagaggttttgga |
27479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 20636 - 20556
Alignment:
| Q |
131 |
aatgatatgtgggacaagatggcacatgaggtta-aaaagtagcaaaagcgacattgggagagtcaagaggttttggacct |
210 |
Q |
| |
|
||||||| |||| |||||||| || ||||| ||| |||||||||||||| |||| ||| ||| | || ||||||||||||| |
|
|
| T |
20636 |
aatgatacgtggaacaagatgacatatgagattagaaaagtagcaaaagagacactggaagaattaataggttttggacct |
20556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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