View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11690_low_27 (Length: 212)
Name: NF11690_low_27
Description: NF11690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11690_low_27 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 18143213 - 18143002
Alignment:
| Q |
1 |
atccaagtggctggcgtccctattgcacatttgttgaggtcttgcaggaaaaaggcgcgaagaatgaagtctttcaagttaaaaaagaaggggtttctgt |
100 |
Q |
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| T |
18143213 |
atccaagtggctggcgtccctattacacatttgttgaggtcttgcaggaaaaaggcgcgaagaatgaagtctttcaagttaaaaaagaaggggtttctgt |
18143114 |
T |
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| Q |
101 |
taagcgtcagggtcgtccacagggaaagaagctttcgtatgaccatagctcaagtgaagctgaggattccattagtacatccgaacaagaggaagatgat |
200 |
Q |
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| T |
18143113 |
taagcgtcagggtcgtccacagggaaagaagctttcttatgaccatagctcaagtgaagatgaggattccattagtacatccgaacaagaggaagatgat |
18143014 |
T |
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| Q |
201 |
gaagacgttcct |
212 |
Q |
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| T |
18143013 |
gaagacgttcct |
18143002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 8 - 212
Target Start/End: Original strand, 18222458 - 18222662
Alignment:
| Q |
8 |
tggctggcgtccctattgcacatttgttgaggtcttgcaggaaaaaggcgcgaagaatgaagtctttcaagttaaaaaagaaggggtttctgttaagcgt |
107 |
Q |
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| T |
18222458 |
tggctggcgtccctattgcacatttgttgaggtcttgcaggaaaaaggcgcgaagaatgaagtctttcaaattataaaagaaggggtttctgttaagcgt |
18222557 |
T |
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| Q |
108 |
cagggtcgtccacagggaaagaagctttcgtatgaccatagctcaagtgaagctgaggattccattagtacatccgaacaagaggaagatgatgaagacg |
207 |
Q |
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| T |
18222558 |
cagggtcgtccacagggaaagaagctttcttatgaccatagctcaagtgaagatgaggattccattagtacatcctaacaagaggaagatgatgaagacg |
18222657 |
T |
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| Q |
208 |
ttcct |
212 |
Q |
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| T |
18222658 |
ttcct |
18222662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 43835042 - 43834965
Alignment:
| Q |
1 |
atccaagtggctggcgtccctattgcacatttgttgaggtcttgcaggaaaaaggcgcgaagaatgaagtctttcaag |
78 |
Q |
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| T |
43835042 |
atcccagtggctggcgtccctattgcacatttgttgaggtcttgcgggaaaaatgtgtgaagaatgaagtctttcaag |
43834965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 122 - 212
Target Start/End: Complemental strand, 43833777 - 43833687
Alignment:
| Q |
122 |
gggaaagaagctttcgtatgaccatagctcaagtgaagctgaggattccattagtacatccgaacaagaggaagatgatgaagacgttcct |
212 |
Q |
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| T |
43833777 |
gggaaagaagctttttaatgaccatagctcaagtgaagacgaggattcaattagtgcatccgaacaagaggaggaggatgaagacgttcct |
43833687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 43833833 - 43833797
Alignment:
| Q |
84 |
aaagaaggggtttctgttaagcgtcagggtcgtccac |
120 |
Q |
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| T |
43833833 |
aaagaaggggtttctgttaagcgtcggggtcgtccac |
43833797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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