View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11690_low_5 (Length: 723)
Name: NF11690_low_5
Description: NF11690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11690_low_5 |
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| [»] scaffold0015 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 635; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 19 - 709
Target Start/End: Complemental strand, 24247755 - 24247065
Alignment:
| Q |
19 |
tctctcactctcgttctccacaaaaagtacatgctattccaacaaaatgaaacttcgttaactagcctggttggtacttcattatttaaccatgtttctt |
118 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
24247755 |
tctctcactctcgttctccacaaaaagtacatgccattccaacaaaatgaaacttcattaactagcctcgttggtacttcattatttaaccatgtttctt |
24247656 |
T |
|
| Q |
119 |
atcctcactagtcaccaaccttacttgccaagatatcatttcctaattttttcctaacccttacccaacactcattttcattccaaaacgacgccacttc |
218 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24247655 |
atcctcaccagtcaccaaccttacttgccaagatatcatttcctaattttttcctaacccttacccaacactcattttcattccaaaacgacgccacttc |
24247556 |
T |
|
| Q |
219 |
ttctgattcagtgatggaagaagaaactaccgccaccacgaggcagctgcgaccaaccacctccaccgaaaccctaacacttgcagccaagaagttcctc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
24247555 |
ttctgattcagtgatggaagaagaaactaccgccaccacgaggcagctgcgaccaaccacctccaccggaaccctaacacttgcagccaagaagttcctc |
24247456 |
T |
|
| Q |
319 |
cgcaagttgtggaattatctgatttcaaacaccaagaggcagcagctggtggctcaacttccgttggatgtcgtggctgaaatcctgtgcagactccctg |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24247455 |
cgcaagttgtggaattatctgatttcaaacaccaagaggaagcagccggtggctcaacttccgttggatgtcgtggctgaaatcctgtgcagactccctg |
24247356 |
T |
|
| Q |
419 |
tcaagtgtctcttacgattccgctgcgtctgcaagtcgtggaattctctcatctcaattgatagaagttttgcaaataaacaccttcgagtgtcaaccaa |
518 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
24247355 |
tcaagtgtctcttacgattccgctgcgtctgcaagttgtggaattctctcatctcaattgatagaagttttgcaaataaacaccttagagtgtcaaccaa |
24247256 |
T |
|
| Q |
519 |
acgccaccatgtcgtcacaagctcattgaacttcccaccaaagttaactgtaatgtcttacccattggactcttttcaactcaactctagtttcacctct |
618 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24247255 |
acgccaccatgtcgtcacaagctcattgaactacccaccaaagttaactgtaatgtcttacccattggactcttttcaactcaactctagtttcacctct |
24247156 |
T |
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| Q |
619 |
gatgccacgttctcctttgaccactcttccctttatcaactaaatactacgttctatagccgcattctcgttggttcttgcaacggtctcc |
709 |
Q |
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| T |
24247155 |
gatgccacgttctcctttgatcactctttcctttatcaactaaatactacgttctatagccgcattctcgttggttcttgtgacggtctcc |
24247065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 377 - 473
Target Start/End: Complemental strand, 23897000 - 23896904
Alignment:
| Q |
377 |
ttccgttggatgtcgtggctgaaatcctgtgcagactccctgtcaagtgtctcttacgattccgctgcgtctgcaagtcgtggaattctctcatctc |
473 |
Q |
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||||||| ||| |||||| ||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||| ||||||||||| ||||| |
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| T |
23897000 |
ttccgtttgatctcgtggttgaaatcctgtgcagactccctgtcaagttcctcctacaattccgctgcgtctgcaagtcatggaattctctaatctc |
23896904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 238 - 310
Target Start/End: Complemental strand, 24806014 - 24805942
Alignment:
| Q |
238 |
gaagaaactaccgccaccacgaggcagctgcgaccaaccacctccaccgaaaccctaacacttgcagccaaga |
310 |
Q |
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| T |
24806014 |
gaagaaaccaccgccaccacaaggcagccgagaccaaccacctccaccgcaaccctaacacttccagtcaaga |
24805942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 397 - 475
Target Start/End: Complemental strand, 24805897 - 24805819
Alignment:
| Q |
397 |
gaaatcctgtgcagactccctgtcaagtgtctcttacgattccgctgcgtctgcaagtcgtggaattctctcatctcaa |
475 |
Q |
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| T |
24805897 |
gaaatcctctgcagactccccgtcaaatctctcctccgattccgctctgtctgcaaatcctggaattctctcatctcaa |
24805819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 404 - 538
Target Start/End: Complemental strand, 45693712 - 45693578
Alignment:
| Q |
404 |
tgtgcagactccctgtcaagtgtctcttacgattccgctgcgtctgcaagtcgtggaattctctcatctcaattgatagaagttttgcaaataaacacct |
503 |
Q |
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|||| |||||||| ||||||| ||| ||| | |||||||| | |||||||||||||||||||| |||||||||||| | ||||| || || ||||| |
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| T |
45693712 |
tgtgtagactcccggtcaagtttcttctacaactccgctgcatatgcaagtcgtggaattctctaatctcaattgatcccaaatttgctaagaatcacct |
45693613 |
T |
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| Q |
504 |
tcgagtgtcaaccaaacgccaccatgtcgtcacaa |
538 |
Q |
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||| |||||||||||| || |||| || |||||| |
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| T |
45693612 |
tcgcatgtcaaccaaacaccgccatctcatcacaa |
45693578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 560 - 638
Target Start/End: Complemental strand, 24243567 - 24243489
Alignment:
| Q |
560 |
agttaactgtaatgtcttacccattggactcttttcaactcaactctagtttcacctctgatgccacgttctcctttga |
638 |
Q |
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| T |
24243567 |
agttaagtgtaacgtcttatccattggactctcttaaactcatatctagtttcacctacgatggtatgttctcctttga |
24243489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 389 - 475
Target Start/End: Original strand, 24512250 - 24512336
Alignment:
| Q |
389 |
tcgtggctgaaatcctgtgcagactccctgtcaagtgtctcttacgattccgctgcgtctgcaagtcgtggaattctctcatctcaa |
475 |
Q |
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||||| ||||||| || || |||||||||| ||||| ||| | | |||| | |||||||||||||| ||||||||||| ||||||| |
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| T |
24512250 |
tcgtgactgaaattctatgtagactccctgccaagttcctcgtgcaattcggatgcgtctgcaagtcatggaattctctgatctcaa |
24512336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 377 - 467
Target Start/End: Complemental strand, 25611850 - 25611760
Alignment:
| Q |
377 |
ttccgttggatgtcgtggctgaaatcctgtgcagactccctgtcaagtgtctcttacgattccgctgcgtctgcaagtcgtggaattctct |
467 |
Q |
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||||||| |||||||| | ||||||||| || || ||||| ||||||| ||| | | |||| | |||||||||||||| ||||||||||| |
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| T |
25611850 |
ttccgtttgatgtcgtcgttgaaatcctttgtaggctcccggtcaagttcctccttcaattctgttgcgtctgcaagtcatggaattctct |
25611760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 391 - 480
Target Start/End: Complemental strand, 41223 - 41134
Alignment:
| Q |
391 |
gtggctgaaatcctgtgcagactccctgtcaagtgtctcttacgattccgctgcgtctgcaagtcgtggaattctctcatctcaattgat |
480 |
Q |
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|||||||||||||| || |||||||||| || | ||| ||| |||||| |||||||||||||| ||||||||||| ||||||| |||| |
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| T |
41223 |
gtggctgaaatcctatgtcgactccctgtgaaattcctcctacaattccgttgcgtctgcaagtcatggaattctctaatctcaaatgat |
41134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 563 - 618
Target Start/End: Complemental strand, 41044 - 40989
Alignment:
| Q |
563 |
taactgtaatgtcttacccattggactcttttcaactcaactctagtttcacctct |
618 |
Q |
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|||||||||||||||| ||||| |||||| |||||||| |||||| ||| |||||| |
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| T |
41044 |
taactgtaatgtcttatccattcgactctcttcaactcgactctatttttacctct |
40989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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