View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11690_low_8 (Length: 535)
Name: NF11690_low_8
Description: NF11690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11690_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 10 - 519
Target Start/End: Complemental strand, 33780292 - 33779783
Alignment:
| Q |
10 |
cagagaagtggggaaagcagttggaaagataatagcccttgcgcttgatttagatgctgattttttcgataagccggaaatgctgggagagtcaattgcg |
109 |
Q |
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| T |
33780292 |
cagagaagtggggaaagcagttggaaagataatagcccttgcgcttgatttagatgctgattttttcgataagccggaaatgctgggagagtcaattgcg |
33780193 |
T |
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| Q |
110 |
actctacgtttgctgcactatggaggtattggatcagtgatcttggtgttttgttgtactttgtacagttataaaggaagataagttatatagccgtgtt |
209 |
Q |
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| T |
33780192 |
actctacgtttgctgcactatggaggtattggatcagtgatcttggtgttttgttgtactttgtacagttataaaggaagataagttatatagccgtgtt |
33780093 |
T |
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| Q |
210 |
catctttttgtttgaaggtcaagtatcggatcccttgaaaggattattcggagctggagctcataccgactatggtttaattacgctgttagcaaccgat |
309 |
Q |
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| T |
33780092 |
catctttttgtttgaaggtcaagtatcggatcccttgaaaggattatttggagctggagctcataccgactatggtttaattacgctgttagcaaccgat |
33779993 |
T |
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| Q |
310 |
catgtctctggtcttcaggtaaggatctgtatgatatttcattcaatattataaatatctgctgtaactcattaggaatctctcaagcaccgacactgac |
409 |
Q |
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| T |
33779992 |
catgtctctggtcttcaggtaaggatctgtatgatatttcattcaatattataaatatctgctgtaattcattaggaatctctcaagcaccgacactgac |
33779893 |
T |
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| Q |
410 |
atcgacactgaacacgtcattgacactaacatgtcagcaccaataataatttgagagaatggaagtcattggatgtaactacatacgtcggtggttttgt |
509 |
Q |
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| T |
33779892 |
atagacactgaacacgtcattgacactaacacgtcagcaccaataataatttgagagaatggaagtcattggatgtaactacatacgtcggtagtgttgt |
33779793 |
T |
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| Q |
510 |
gtcagtatca |
519 |
Q |
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| T |
33779792 |
gtcagtatca |
33779783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 81
Target Start/End: Original strand, 43200439 - 43200510
Alignment:
| Q |
10 |
cagagaagtggggaaagcagttggaaagataatagcccttgcgcttgatttagatgctgattttttcgataa |
81 |
Q |
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| T |
43200439 |
cagagaagtgggaaaagcacttgcaaggataatagcccttgcacttggtttggatgctaatttttttgataa |
43200510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 332
Target Start/End: Original strand, 43200691 - 43200775
Alignment:
| Q |
248 |
aaggattattcggagctggagctcataccgactatggtttaattacgctgttagcaaccgatcatgtctctggtcttcaggtaag |
332 |
Q |
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| T |
43200691 |
aagggttatacgcagctggagctcatactgactatggtctgattactctgttggcaacagatgatgtccagggtcttcaggtaag |
43200775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 470
Target Start/End: Original strand, 17285051 - 17285089
Alignment:
| Q |
432 |
acactaacatgtcagcaccaataataatttgagagaatg |
470 |
Q |
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| T |
17285051 |
acactaacaagtcaacaccaataataatttgagagaatg |
17285089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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