View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11691_high_20 (Length: 250)
Name: NF11691_high_20
Description: NF11691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11691_high_20 |
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| [»] scaffold0018 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 24911126 - 24911365
Alignment:
| Q |
1 |
tgacgccctggttatttgctattttcattgtgacaaatagtttcacagcaagtttgacatccataactatttcacaagtaaaaccatcggtgttagatat |
100 |
Q |
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| T |
24911126 |
tgacgccctggttatttgctattttcattgtgacaaatagtttcacagcaagtttgacatccataactatttcacaagtaaagccatcggtgttagatat |
24911225 |
T |
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| Q |
101 |
ccagacccttaaagaaagaaattcaccggtcgggtgtaatggaaattcatttattgtgaagtatttgattgacgtactgaagtttaagcctgagaatatt |
200 |
Q |
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| T |
24911226 |
ccagacccttaaagaaagaaattcaccagtcgggtgtaatggaaattcatttattgtgaagtatttgattgacgtactaaagtttaagcctgagaatatt |
24911325 |
T |
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| Q |
201 |
aggaaaataaattccatgagtgactatgctgctgcctttg |
240 |
Q |
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| T |
24911326 |
aggaaaataaattccatgagtgactacgctgctgcctttg |
24911365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 24898973 - 24899204
Alignment:
| Q |
9 |
tggttatttgctattttcattgtgacaaatagtttcacagcaagtttgacatccataactatttcacaagtaaaaccatcggtgttagatatccagaccc |
108 |
Q |
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| T |
24898973 |
tggttatttgctattttcattgtgacaaatagtttcacagcaagtttgacatcaataactatttcgcaagtaaaaccatcggtgttagatatccagactc |
24899072 |
T |
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| Q |
109 |
ttaaagaaagaaattcaccggtcgggtgtaatggaaattcatttattgtgaagtatttgattgacgtactgaagtttaagcctgagaatattaggaaaat |
208 |
Q |
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| T |
24899073 |
ttaaagaaagaaattcaccagtcgggtgtaatggaaattcctttattgtgaagtatctgactgacgtattaaagtttaagcctgagaatattaggaaaat |
24899172 |
T |
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| Q |
209 |
aaattccatgagtgactatgctgctgcctttg |
240 |
Q |
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| T |
24899173 |
aaattccatgagtgactaccctgctgcctttg |
24899204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 74 - 240
Target Start/End: Original strand, 24987965 - 24988133
Alignment:
| Q |
74 |
acaagtaaaaccatcggtgttagatatccagacccttaaagaaagaaattcaccggtcgggtgtaatggaaattcatttattgtgaagtatttgattgac |
173 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
24987965 |
acaagtaaaaccatcggtgttagatatccagactcttaacgaaagaaattcaccagtcgggtgtaatggaaattcatttattgtgaagtatctgactgac |
24988064 |
T |
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| Q |
174 |
gtactgaag--tttaagcctgagaatattaggaaaataaattccatgagtgactatgctgctgcctttg |
240 |
Q |
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| T |
24988065 |
gtattaaagtttttaagcctgagaatattaggaaaataaattccatgagtgactaccctgctgcctttg |
24988133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 149978 - 150209
Alignment:
| Q |
9 |
tggttatttgctattttcattgtgacaaatagtttcacagcaagtttgacatccataactatttcacaagtaaaaccatcggtgttagatatccagaccc |
108 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| |||| |||||||||||||| |||| |
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| T |
149978 |
tggttatttgctattttcattgtaacaaatagtttcacagcaagtttaacatccataacaatttcacaagtaaagtcatctgtgttagatatccaaaccc |
150077 |
T |
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| Q |
109 |
ttaaagaaagaaattcaccggtcgggtgtaatggaaattcatttattgtgaagtatttgattgacgtactgaagtttaagcctgagaatattaggaaaat |
208 |
Q |
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| T |
150078 |
ttaaagaaagaaatttaccagttggatgtaatggaaattcatttattgtgaagtatttgtctgaagtactgaaattcaagcctgagaacattagaaaatt |
150177 |
T |
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| Q |
209 |
aaattccatgagtgactatgctgctgcctttg |
240 |
Q |
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| T |
150178 |
caattccattaatgactaccctgctgcctttg |
150209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 141836 - 142005
Alignment:
| Q |
9 |
tggttatttgctattttcattgtgacaaatagtttcacagcaagtttgacatccataactatttcacaagtaaaaccatcggtgttagatatccagaccc |
108 |
Q |
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||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||| |
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| T |
141836 |
tggttctttgctattttcattgtgacaaatagtttcacggcaagtttgacatccataactatttcacaagtaaagccatcggtgttaaatatcgagaccc |
141935 |
T |
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| Q |
109 |
ttaaagaaagaaattcaccggtcgggtgtaatggaaattcatttattgtgaagtatttgattgacgtact |
178 |
Q |
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| T |
141936 |
ttaaagaaagaaattccccgattggttgtgatggaaattcttttattgtcaagtatttgactgaagtact |
142005 |
T |
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