View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11691_high_25 (Length: 226)
Name: NF11691_high_25
Description: NF11691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11691_high_25 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: scaffold0027 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 63059 - 63246
Alignment:
| Q |
20 |
gaagccaaacatagacacaattttcattgaaaatcatagttgtgcataaatattataaaacgtttaatattcacatcagcattttgaaaatcaaaccgga |
119 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
63059 |
gaagccaaacatagacacaattttcattgaaaatcaaagttgtgcataaatattataaaacgttttatattcacatcagcattttgaaaatcaaaccgga |
63158 |
T |
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| Q |
120 |
catcaaatcgacaaaactcctatcatggttcagctacttcaaagttcaaagcactaaaataactaaaccatggtttatacagttcaac |
207 |
Q |
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| T |
63159 |
catcaaatcgacaaaactcctatcatggttcagctacttcaaagttcaaagcactaaaataactaaaccatggtttatacagttcaac |
63246 |
T |
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Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 21320740 - 21320553
Alignment:
| Q |
20 |
gaagccaaacatagacacaattttcattgaaaatcatagttgtgcataaatattataaaacgtttaatattcacatcagcattttgaaaatcaaaccgga |
119 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
21320740 |
gaagccaaacatagacacaattttcattgaaaatcaaagttgtgcataaatattataaaacgttttatattcacatcagcattttgaaaatcaaaccgga |
21320641 |
T |
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| Q |
120 |
catcaaatcgacaaaactcctatcatggttcagctacttcaaagttcaaagcactaaaataactaaaccatggtttatacagttcaac |
207 |
Q |
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| T |
21320640 |
catcaaatcgacaaaactcctatcatggttcagctacttcaaagttcaaagcactaaaataactaaaccatggtttatacagttcaac |
21320553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 44633722 - 44633767
Alignment:
| Q |
20 |
gaagccaaacatagacacaattttcattgaaaatcatagttgtgca |
65 |
Q |
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|||||||||||| |||||||||||||||| |||||| |||| |||| |
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| T |
44633722 |
gaagccaaacatcgacacaattttcattgcaaatcaaagttatgca |
44633767 |
T |
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