View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11691_high_5 (Length: 535)
Name: NF11691_high_5
Description: NF11691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11691_high_5 |
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| [»] scaffold0170 (1 HSPs) |
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Alignment Details
Target: scaffold0170 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: scaffold0170
Description:
Target: scaffold0170; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 19 - 524
Target Start/End: Complemental strand, 15058 - 14554
Alignment:
| Q |
19 |
atacgcatgccattaaaagcatgaagaataaatacaaaatagtgtatcactttcttccaaaagcattcaattgaattgtctaaacgaaagccaaccactc |
118 |
Q |
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| T |
15058 |
atacgcatgccattaaaaccatgaagaataaatacaaaatagtatatcactttcttccaaaagcattcaattgaattgtctaaacgaaagccaaccacta |
14959 |
T |
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| Q |
119 |
ctaagtgatgagcttcaatcgtattgatattttaactttgtctttgttctattactatgaacaagataatgaggtagtgaatgttgaactaattcacttg |
218 |
Q |
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| T |
14958 |
ctaagtgatgagcttcaatcgtattgatattttaactttgtctttgttctattactatgaacgagataatgaggtagtgaatgttgaactaattcacttg |
14859 |
T |
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| Q |
219 |
tttgctggactacatgattatcagactcagcttcatcgttgtagcttccattgctgcactcaatatttctgcgtcaaaaagaaaccgtttggtaaaatct |
318 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14858 |
tttgctggacaacatgattatcagactcagcttcatcgttgtagcttccattgctgcactcaatatttctgcgtcaaaaagaaaccatttggtaaaatct |
14759 |
T |
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| Q |
319 |
caaggtaccataatttttcctcagttaattcacactttttggttaaggagtccagtggctggaggtcacacattttaaatgtagaaaagtaggaaattag |
418 |
Q |
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| T |
14758 |
caaggtaccataatttttcct-agttaattcacactttttggttaaggagtccgatggctggaggttacacattttaaatgtagagaagtaggaaattag |
14660 |
T |
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| Q |
419 |
ggtctctgggttcgaacctggctcctacatatattatgaacgtccctactaattgagttaagctcaaataccatttctgtaagagataaatattataact |
518 |
Q |
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| T |
14659 |
ggtctctgggttcgaacccgactcctacatatattatgaacgtccctactaattgagataagctcaattaccatttctctaagagataaatattataact |
14560 |
T |
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| Q |
519 |
ccctat |
524 |
Q |
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| T |
14559 |
ccctat |
14554 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 39635429 - 39635383
Alignment:
| Q |
354 |
tttttggttaaggagtccagtggctggaggtcacacattttaaatgt |
400 |
Q |
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| T |
39635429 |
ttttttgttaagtagtctagtggctggagatcacacattttaaatgt |
39635383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 408
Target Start/End: Original strand, 32141990 - 32142031
Alignment:
| Q |
367 |
agtccagtggctggaggtcacacattttaaatgtagaaaagt |
408 |
Q |
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| T |
32141990 |
agtctagtggctggagctcacacattttaaatgtggaaaagt |
32142031 |
T |
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