View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11691_low_10 (Length: 435)
Name: NF11691_low_10
Description: NF11691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11691_low_10 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 219 - 435
Target Start/End: Original strand, 223378 - 223587
Alignment:
| Q |
219 |
gagactttgtagcacatgaacatttaaatatcattttataaaattaataataacatttgattgacatacacgcatgaatgcataatagtacaaaacaagc |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
223378 |
gagactttgtagcacatgaacatttaaatatcattttataaaattaataataacatttgattgacatgca--------tgcataatagtacaaaacaagc |
223469 |
T |
|
| Q |
319 |
cagaaaaaacactagtatttgagacataaacatatataggcagaaaaacaattc-aaaagaaagagacaaaaataaacatactatttgagtgtcatgaat |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
223470 |
cagaaaaaacactagtatttgagacataaacatatataggcagaaaaacaagtcaaaaagaaagagataaaaataaacatactatttgagtgtcatgaat |
223569 |
T |
|
| Q |
418 |
gggtgagggaaggatggc |
435 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
223570 |
gggtgagggaaggatggc |
223587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 251 - 435
Target Start/End: Original strand, 218198 - 218379
Alignment:
| Q |
251 |
attttataaaattaataataacatttgattgacatacacgcatgaatgcataatagtacaaaacaagccagaaaaaa-cactagtatttgagacataaac |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
218198 |
attttataaaattaataataacatttgattgacat----gcatgcatgcataatagtacaaaacaagccagaaaaaagcactagtatttgagacataaac |
218293 |
T |
|
| Q |
350 |
atatataggcagaaaaacaattcaaaagaaagagacaaaaataaacatactatttgagtgtcatgaatgggtgagggaaggatggc |
435 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||| |
|
|
| T |
218294 |
atatataggcagaaaaacaactcaaaagaaagagacaaaaataaacatactaatttagtgtcatgaatggctgagggaaggatggc |
218379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 223162 - 223313
Alignment:
| Q |
1 |
taacatactaacatttatcattnnnnnnntgtcaaaatcaatttcacatctctcttgaataaattttgccacatccaaaactgaaccaaacataaactaa |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
223162 |
taacatactaacatttatcattaaaaaaatgtcaaaatcaatttcacatctcta--gaataaattttgccacatccaaaactaaaccaaacataaactaa |
223259 |
T |
|
| Q |
101 |
actaaactcacaataaaagtttcaaaatcaatttttacaaccttagtatgaaag |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
223260 |
actaaactcacaataaaagtttcaaaatcaatttttacaaccttagtatgaaag |
223313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 428
Target Start/End: Original strand, 3809295 - 3809352
Alignment:
| Q |
371 |
tcaaaagaaagagacaaaaataaacatactatttgagtgtcatgaatgggtgagggaa |
428 |
Q |
| |
|
|||||||||||||| ||| |||| ||||| ||||||| |||||||||||||||||| |
|
|
| T |
3809295 |
tcaaaagaaagagagaaaccgaaacttactaattgagtggcatgaatgggtgagggaa |
3809352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University