View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11691_low_11 (Length: 389)
Name: NF11691_low_11
Description: NF11691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11691_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 43513839 - 43513460
Alignment:
| Q |
1 |
tattttaatttcatcaaattaatttcttaactatatgtgatgcgtttattctttttcattcccttatttgatttctctttcgtattacttctgttgattt |
100 |
Q |
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| T |
43513839 |
tattttaatttcatcaaattaatttcttaactatatgtgatgcgtttattctttttcattcccttatttgatttctctttcgtattacttctgttgattt |
43513740 |
T |
|
| Q |
101 |
attcgtatgattgctctatcttttgcagagttgatggtgaagctagttgaattatgtggttcatcagtcacactgaaatgtccattaccaaacggagatt |
200 |
Q |
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| T |
43513739 |
attcgtatgattgctctatcttttgcagagttgatggtgaagctagttgaattatgtggttcatcagtcacactgaaatgtccattaccaaacggagatt |
43513640 |
T |
|
| Q |
201 |
tagagacattgatttcaatcaccagcgatgaagatctgaaaaatataattgaagaatacgatcgcgcttcttcatcattaattcatccattgaagatcag |
300 |
Q |
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| T |
43513639 |
tagagacattgatttcaatcaccagcgatgaagatctgaaaaatataattgaagaatacgatcgagcttcttcatcattaattcatccattgaagatcag |
43513540 |
T |
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| Q |
301 |
agccattctttcaccgcccaaatcattcaagaaattatctcctcctccgtcttcttcgtccagctcaactcactctctgc |
380 |
Q |
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| T |
43513539 |
agccattctttcaccgcccaaatcattcaagaaattatctcctcctccgtcttcttcgtccagctcaactcactctctgc |
43513460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 121 - 235
Target Start/End: Complemental strand, 34589665 - 34589551
Alignment:
| Q |
121 |
ttttgcagagttgatggtgaagctagttgaattatgtggttcatcagtcacactgaaatgtccattaccaaacggagatttagagacattgatttcaatc |
220 |
Q |
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||||||||| |||||||||||||| | ||||| || |||||||| || || | |||| ||||||||||||||||||||| || |||||||| ||| |
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| T |
34589665 |
ttttgcagaattgatggtgaagcttgaagaattgtgcggttcatctgtgactttacggtgtcaattaccaaacggagatttagaaacgttgatttccatc |
34589566 |
T |
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| Q |
221 |
accagcgatgaagat |
235 |
Q |
| |
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|||| |||||||||| |
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| T |
34589565 |
accaacgatgaagat |
34589551 |
T |
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