View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11691_low_12 (Length: 381)
Name: NF11691_low_12
Description: NF11691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11691_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 3 - 309
Target Start/End: Original strand, 1164479 - 1164785
Alignment:
| Q |
3 |
aactagtcataacatcctacatttccaaatgatataaactaatcaacaagaaaacatgatattaataaagattaagagagattaatgtagacctaaatag |
102 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1164479 |
aactagtcataacatactacatttccaaatgatataaactaatcaataagaaaacatgatattaataaagactaagagagattaatgtagacctaaatag |
1164578 |
T |
|
| Q |
103 |
aagcaactaaagatgaaatttaacttgtggaagtgaaaccatgtgtctaaagccaaaagctcatacataaaatcaatgttgagacacaaatatgaggccc |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1164579 |
aagcaactaaagatgaaatttaacttgtggaagtgaaaccatgtgtctaaagccaaaagctcatacataaaatcaatgttgatacacaaatatgaggccc |
1164678 |
T |
|
| Q |
203 |
tccagataatgttgttgcagaattatgagtaccattgtgcccaccattgtatccgccattggcgagtgtgccgcctataacaccaccgataattccacct |
302 |
Q |
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||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1164679 |
tcccgataatgttgatgcagaattatgagtaccattgtgcccaccattgtgtccgccattggcgagtgtgccgcctataacaccaccgataattccacct |
1164778 |
T |
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| Q |
303 |
gcaactg |
309 |
Q |
| |
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||||||| |
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| T |
1164779 |
gcaactg |
1164785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 147 - 301
Target Start/End: Original strand, 1148456 - 1148613
Alignment:
| Q |
147 |
gtctaaagccaaaagctcatacataaaatcaatgttgagacacaaatatgaggccctccagataatgttgttgcagaattatgagtaccattgtgcccac |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1148456 |
gtctaaagccaaaagctcatacataaaatcaatgttgagacacaaaaatgaggcactgcagataatgttgttgcagaattatgagtaccattgtgcccac |
1148555 |
T |
|
| Q |
247 |
cattgtatccgccattggcgagtgtgccgcctataa---caccaccgataattccacc |
301 |
Q |
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|||||| ||||||||||| | ||||||||||| || |||| |||||||||||||| |
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| T |
1148556 |
cattgtgaccgccattggcaactgtgccgcctacaattccaccgccgataattccacc |
1148613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 66 - 263
Target Start/End: Original strand, 1171928 - 1172127
Alignment:
| Q |
66 |
aataaagattaagagag-attaatgtagacctaaatagaagcaactaaagatgaaatttaacttgtggaagtgaaacca-tgtgtctaaagccaaaagct |
163 |
Q |
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|||||||| |||||| | |||||||||| ||||||| |||||||||| |||||| | |||| | |||||||||| | ||||| ||||||||||| || |
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| T |
1171928 |
aataaagactaagagtggattaatgtaggtctaaataatagcaactaaaaatgaaactaaactactagaagtgaaacaaatgtgtttaaagccaaaaact |
1172027 |
T |
|
| Q |
164 |
catacataaaatcaatgttgagacacaaatatgaggccctccagataatgttgttgcagaattatgagtaccattgtgcccaccattgtatccgccattg |
263 |
Q |
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|| ||| ||||||||||| ||||||| || |||||||| | |||||||||||||||||||||| ||||| ||||||| ||||||||| ||||| |||||| |
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| T |
1172028 |
caaacacaaaatcaatgtggagacactaaaatgaggccatgcagataatgttgttgcagaattctgagtgccattgtacccaccattatatccaccattg |
1172127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 143 - 263
Target Start/End: Original strand, 1181255 - 1181375
Alignment:
| Q |
143 |
atgtgtctaaagccaaaagctcatacataaaatcaatgttgagacacaaatatgaggccctccagataatgttgttgcagaattatgagtaccattgtgc |
242 |
Q |
| |
|
|||||| |||||||||||||||| ||| |||||||| ||||||||||||| |||||||| | |||||||||||||||||||||| ||||| ||||||| | |
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| T |
1181255 |
atgtgtttaaagccaaaagctcaaacacaaaatcaaagttgagacacaaaaatgaggccatgcagataatgttgttgcagaattctgagtgccattgtac |
1181354 |
T |
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| Q |
243 |
ccaccattgtatccgccattg |
263 |
Q |
| |
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|||||||| ||||| |||||| |
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| T |
1181355 |
ccaccattatatccaccattg |
1181375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 124 - 224
Target Start/End: Original strand, 1137012 - 1137112
Alignment:
| Q |
124 |
aacttgtggaagtgaaaccatgtgtctaaagccaaaagctcatacataaaatcaatgttgagacacaaatatgaggccctccagataatgttgttgcaga |
223 |
Q |
| |
|
|||| ||||||||||||| |||| |||||||||||||||| |||||||| |||||||||||||||| || ||||||| ||||||||| || |||||| |
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| T |
1137012 |
aactagtggaagtgaaacaatgtaattaaagccaaaagctcaaacataaaagaaatgttgagacacaaacataaggccctgcagataatgatggtgcaga |
1137111 |
T |
|
| Q |
224 |
a |
224 |
Q |
| |
|
| |
|
|
| T |
1137112 |
a |
1137112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 124 - 224
Target Start/End: Original strand, 1141666 - 1141766
Alignment:
| Q |
124 |
aacttgtggaagtgaaaccatgtgtctaaagccaaaagctcatacataaaatcaatgttgagacacaaatatgaggccctccagataatgttgttgcaga |
223 |
Q |
| |
|
|||| ||||||||||||| || || || | ||||||||||| ||||||||| |||||||||||||||| || ||||||| ||||||||| || |||||| |
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| T |
1141666 |
aactagtggaagtgaaacaatatgattataaccaaaagctcaaacataaaataaatgttgagacacaaacataaggccctgcagataatgatgatgcaga |
1141765 |
T |
|
| Q |
224 |
a |
224 |
Q |
| |
|
| |
|
|
| T |
1141766 |
a |
1141766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 197
Target Start/End: Original strand, 1160009 - 1160124
Alignment:
| Q |
82 |
gattaatgtagacctaaatagaagcaactaaagatgaaatttaacttgtggaagtgaaaccatgtgtctaaagccaaaagctcatacataaaatcaatgt |
181 |
Q |
| |
|
||||||| ||| |||||| ||||||||||||| |||| | |||| | |||||||| |||| | || |||||| |||| |||| ||||||||| ||||| |
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| T |
1160009 |
gattaatataggcctaaacagaagcaactaaacatgatacttaattagtggaagtaaaacaacatgattaaagcaaaaaactcaaacataaaataaatgt |
1160108 |
T |
|
| Q |
182 |
tgagacacaaatatga |
197 |
Q |
| |
|
|| |||||||| |||| |
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| T |
1160109 |
tgggacacaaacatga |
1160124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 1145198 - 1145292
Alignment:
| Q |
130 |
tggaagtgaaaccatgtgtctaaagccaaaagctcatacataaaatcaatgttgagacacaaatatgaggccctccagataatgttgttgcagaa |
224 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||| ||||| | ||||||||||||| || ||||| || | |||| | ||||||||||||| |
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| T |
1145198 |
tggaagtgaaataatgtgattaaagccaaaagctcatgcataagaaaaatgttgagacaccaaaatgagtccttgcagaaactgttgttgcagaa |
1145292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 231
Target Start/End: Original strand, 1133477 - 1133558
Alignment:
| Q |
150 |
taaagccaaaagctcatacataaaatcaatgttgagacacaaatatgaggccctccagataatgttgttgcagaattatgag |
231 |
Q |
| |
|
|||||||||||| | | ||||||||| |||||||||| ||||| || || |||| || | |||| || |||||||||||||| |
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|
| T |
1133477 |
taaagccaaaagattacacataaaataaatgttgagaaacaaaaataagtccctgcataaaatgatgctgcagaattatgag |
1133558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 1171852 - 1171901
Alignment:
| Q |
19 |
ctacatttccaaatgatataaactaatcaacaagaaaacatgatattaat |
68 |
Q |
| |
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|||||||| ||||||| | |||| ||||||||||| |||||||||||||| |
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|
| T |
1171852 |
ctacatttacaaatgacacaaacaaatcaacaagagaacatgatattaat |
1171901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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