View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11691_low_13 (Length: 371)
Name: NF11691_low_13
Description: NF11691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11691_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 13 - 314
Target Start/End: Original strand, 32349579 - 32349882
Alignment:
| Q |
13 |
agtagcaaaggattaaagataacacaaatcgcaaacaatggaacatgatcccttgtttacgcagttggacaattgtgtctatctttgcgactaaagagca |
112 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32349579 |
agtaacaaaagattaaagataacacaaatcgcaaacaatggaacatgatcccttgtttacgcagttggacaattgtgtctatctttgcgactaaagagca |
32349678 |
T |
|
| Q |
113 |
gctatagttccatagattagtacttgagtgaattagggttgtcagtattacaaggc--atatataatactacggtccagattacaacaatgcccctgacc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32349679 |
gctatagttccatagattagtacttgagtgaattagggttgtcagtattacaaggcatatatataatactacggtccagattacaacaatgcccctgacc |
32349778 |
T |
|
| Q |
211 |
catactgtgggggctatgtcccccgcacccccaaatgcaagggtgaagggagcttcgcaatgctgggctgactcagctcccctgccccttgcccctcttt |
310 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
32349779 |
cgtactgtgggggctatgtcccccgcacccccaaatgcaagggtgaagggagcttcgcaatgctgcgctgactcagctcccctgccccttgcccctcttt |
32349878 |
T |
|
| Q |
311 |
tgtg |
314 |
Q |
| |
|
|||| |
|
|
| T |
32349879 |
tgtg |
32349882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 287 - 371
Target Start/End: Original strand, 54619521 - 54619605
Alignment:
| Q |
287 |
ctcccctgccccttgcccctcttttgtgcctatgagtgatactcaaacataatcacttgaatatagtttgttgtatgattcaact |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
54619521 |
ctcccctgccccttgcccctcttttgtgcctatgagtgatactcaaacataatcacttgaatatagtctgttgtatgattcaact |
54619605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 29844117 - 29844182
Alignment:
| Q |
136 |
ttgagtgaattagggttgtcagtattacaaggcatat--ataatactacggtccagattacaacaa |
199 |
Q |
| |
|
|||||||||||| |||| || | ||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
29844117 |
ttgagtgaattaaggtttccaattttacaaggcatatatataatactacggtccatattacaacaa |
29844182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 23 - 175
Target Start/End: Complemental strand, 35037728 - 35037578
Alignment:
| Q |
23 |
gattaaagataacacaaatcgcaaacaatggaacatgatcccttgtttacgc-agttggacaattgtgtctatctttgcgactaaagagcagctatagtt |
121 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||| ||||| |||||||||| | |||| ||||||||||| || || ||||| |||| ||||||| || |
|
|
| T |
35037728 |
gattaaagataacataaatcgtaaacaatggaacttgatcgtttgtttacgcaatttggccaattgtgtctgcctctgtgactatagagtagctataatt |
35037629 |
T |
|
| Q |
122 |
ccatagattagtacttgagtgaattagggttgtcagtattacaaggcatatata |
175 |
Q |
| |
|
|| || || |||||||||| ||||||||| || | ||||||| |||||||| |
|
|
| T |
35037628 |
cc---gaatattacttgagtgtattagggtttacaatgttacaagccatatata |
35037578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 38833510 - 38833558
Alignment:
| Q |
13 |
agtagcaaaggattaaagataacacaaatcgcaaacaatggaacatgat |
61 |
Q |
| |
|
|||| |||| ||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
38833510 |
agtaacaaaagattaaagaaaacacaaattgcaaacaatggaacatgat |
38833558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 208
Target Start/End: Original strand, 43611903 - 43611942
Alignment:
| Q |
169 |
atatataatactacggtccagattacaacaatgcccctga |
208 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
43611903 |
atatataagactacggtccagattacaacaatacccctga |
43611942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 214
Target Start/End: Original strand, 5948955 - 5949038
Alignment:
| Q |
133 |
tacttgagtgaattagggttgtcagtattacaaggc--atatataatactacggtccagattacaacaatgcccctgacccata |
214 |
Q |
| |
|
|||||||||||||||| ||| |||| ||||||| | ||||||| ||||||||| || ||||||||||| ||| ||| ||||| |
|
|
| T |
5948955 |
tacttgagtgaattagtgtttacagtgttacaagccatatatatagtactacggttcatattacaacaatacccatgaaccata |
5949038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 8705701 - 8705740
Alignment:
| Q |
23 |
gattaaagataacacaaatcgcaaacaatggaacatgatc |
62 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
8705701 |
gattaaagaaaacacaaatcacaaacaatggaacatgatc |
8705740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 174
Target Start/End: Original strand, 21399674 - 21399809
Alignment:
| Q |
37 |
caaatcgcaaacaatggaacatgatccctt-gtttacgcagttggacaattgtgtctatctttgcgactaaagagcagctatagttccatagattagtac |
135 |
Q |
| |
|
||||||| ||||||||||||| |||| || |||||||||||| | |||||||| ||| || || ||||| |||| ||||||| |||| || || ||| |
|
|
| T |
21399674 |
caaatcgtaaacaatggaacacaatcctttcgtttacgcagtttgccaattgtgcctacctctgagactatagagtagctataattccgta---tattac |
21399770 |
T |
|
| Q |
136 |
ttgagtgaattagggttgtcagtattacaaggcatatat |
174 |
Q |
| |
|
||||| |||||| |||| ||| ||||||| ||||||| |
|
|
| T |
21399771 |
ttgagcgaattaaggtttatagtgttacaagtcatatat |
21399809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University