View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11691_low_16 (Length: 311)
Name: NF11691_low_16
Description: NF11691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11691_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 3e-88; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 24911028 - 24910856
Alignment:
| Q |
1 |
ttgaaaagctatgagttaagcctaactctatcctataaaattttaatgtaagatgagtgatgtttcatagttaaaacatattttcaagtcatatctaact |
100 |
Q |
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| T |
24911028 |
ttgaaaagctatgagttaagcctaactctatcctataaaattttaatgtaagatgagtgatgtttcatagttaaaacatattttcaagtcatatctaact |
24910929 |
T |
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| Q |
101 |
caacgttagcgtgtcaatacatacattcattaactctaataccatcatgtaacattaagattgcgcgtaagtc |
173 |
Q |
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| T |
24910928 |
caacgttagcgtgtcaatacatacattcattaactataataccatcgtgtaacattaagattgcgcgtaagtc |
24910856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 171 - 296
Target Start/End: Complemental strand, 24910823 - 24910698
Alignment:
| Q |
171 |
gtcttacacttgtaaccactgctaaagttttggtcatcaatttatgctgatatttagtagctatgaaatttactcaaataaacatgttcagtcttcatgt |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24910823 |
gtcttacacttgtaaccactgctaaagttttggtcatcaatttatgctgatatttagtagctatgaaatttactcaaataaacatgttcagtcttcatgt |
24910724 |
T |
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| Q |
271 |
tagaggacttactatgtgcataaaat |
296 |
Q |
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| T |
24910723 |
tagaggacttactatgtgcataaaat |
24910698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 71 - 296
Target Start/End: Complemental strand, 24898815 - 24898596
Alignment:
| Q |
71 |
ttaaaacatattttcaagtcatatctaactcaacgttagcgtgtcaatacatacattcattaactctaataccatcatgtaacattaagattgcgcgtaa |
170 |
Q |
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|||||||||||||||||||||||||||| |||| | || | ||| ||||| |||||||||||||||||| | |||||||| | |||||| |||| |
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| T |
24898815 |
ttaaaacatattttcaagtcatatctaattcaaaatcagattctcattacat----tcattaactctaataccagc--gtaacatttaaattgcgtgtaa |
24898722 |
T |
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| Q |
171 |
gtct---tacacttgtaaccactgctaaagttttggtcatcaatttatgctgatatttagtagctatgaaatttactcaaataaacatgttcagtcttca |
267 |
Q |
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|| ||| |||||||||||| | |||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||| ||||| ||| |
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| T |
24898721 |
atcaccctacgcttgtaaccactacgaaagttttggtctacaatttaagctgatatttggtagctatgaaatttactcaaataaac---ttcagcaatca |
24898625 |
T |
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| Q |
268 |
tgttagaggacttactatgtgcataaaat |
296 |
Q |
| |
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||||||| |||||||||||||||||||| |
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| T |
24898624 |
tgttagacaacttactatgtgcataaaat |
24898596 |
T |
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