View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11691_low_19 (Length: 287)
Name: NF11691_low_19
Description: NF11691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11691_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 7 - 274
Target Start/End: Original strand, 26976032 - 26976299
Alignment:
| Q |
7 |
atgtggaccgttgatgagtctcattgataccgctgttgttggtcaaggaagttcaattgaacttgctgctttaggtatttatatgattttatcacattca |
106 |
Q |
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| T |
26976032 |
atgtggaccgttgatgagtctcattgataccgctgttgttggtcaaggaagttcaattgaacttgctgctttaggtatttttatgattttatcacattca |
26976131 |
T |
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| Q |
107 |
ctgtttaattttgaaattccgcaataatgtgaattttgttttctacatgagcaggtcctgctactgttttttgcgattatttgggctacttgtttatgtt |
206 |
Q |
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| T |
26976132 |
ctgtttaattttgaaattccgcaataatgtgaattttgttttctacatgagcaggtcctgctactgttttttgcgattatttgggctacttgtttatgtt |
26976231 |
T |
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| Q |
207 |
tttgtcgattgctacttcgaatatggttgctactgcacttgctaaacaggttagttctttactctcct |
274 |
Q |
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| T |
26976232 |
tttgtcgattgctacttcgaatatggttgctactgcacttgctaaacaggttagttctttactctcct |
26976299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 7 - 258
Target Start/End: Complemental strand, 27005874 - 27005622
Alignment:
| Q |
7 |
atgtggaccgttgatgagtctcattgataccgctgttgttggtcaaggaagttcaattgaacttgctgctttaggtatttatatgattttatcacattca |
106 |
Q |
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| T |
27005874 |
atgtggaccgttgatgagtctcattgatacagctgttgttggtcaaggaagttcaattgaacttgctgctttaggtatttatatgattttatcacattga |
27005775 |
T |
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| Q |
107 |
ctgtttaatt-ttgaaattccgcaataatgtgaattttgttttctacatgagcaggtcctgctactgttttttgcgattatttgggctacttgtttatgt |
205 |
Q |
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| T |
27005774 |
ctgtttaattcttgaaattccgcaataatgtgaatttcgttttctacatgagcaggtcctgctactgttttttgtgattatttgggttactcttttatgt |
27005675 |
T |
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| Q |
206 |
ttttgtcgattgctacttcgaatatggttgctactgcacttgctaaacaggtt |
258 |
Q |
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| T |
27005674 |
ttctgtcgattgccacttcgaatatggttgctactgcccttgctaagcaggtt |
27005622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 267
Target Start/End: Complemental strand, 26991424 - 26991167
Alignment:
| Q |
11 |
ggaccgttgatgagtctcattgataccgctgttgttggtcaaggaagttcaattgaacttgctgctttaggtatttatatgattttatcacattcactgt |
110 |
Q |
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| T |
26991424 |
ggaccgttgatgagtctcattgatactgctgttgttggtcaaggaagttcgattgaacttgctgctttaggtatttttatgattttatgacattcactgt |
26991325 |
T |
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| Q |
111 |
ttaatt-ttgaaattccgcaataatgtgaattttgttttctacatgagcaggtcctgctactgttttttgcgattatttgggctacttgtttatgttttt |
209 |
Q |
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| T |
26991324 |
ttaattgttgaaattgcccaataatttgaattttgttttcttcatgagcaggtcctgctactgttttttgtgattatttgggctactcttttatgtttct |
26991225 |
T |
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| Q |
210 |
gtcgattgctacttcgaatatggttgctactgcacttgctaaacaggttagttcttta |
267 |
Q |
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| T |
26991224 |
gtcgattgctacttcgaatatggttgctactgcccttgctaaacaggtttgtttttta |
26991167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 26946551 - 26946473
Alignment:
| Q |
7 |
atgtggaccgttgatgagtctcattgataccgctgttgttggtcaaggaagttcaattgaacttgctgctttaggtatt |
85 |
Q |
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| T |
26946551 |
atgtggaccgttgatgagtttaatcgatactgctgttattggtcagggaagttcaattgagcttgctgctttaggtatt |
26946473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 259
Target Start/End: Complemental strand, 26946347 - 26946245
Alignment:
| Q |
157 |
gcaggtcctgctactgttttttgcgattatttgggctacttgtttatgtttttgtcgattgctacttcgaatatggttgctactgcacttgctaaacagg |
256 |
Q |
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|||||||||||||||||| |||| ||||| || |||| | || |||||| | || |||||||||| ||||||||||||||||| || |||||||||| |
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| T |
26946347 |
gcaggtcctgctactgttgtttgtgattacatgagctatgtcttcatgtttctatcagttgctacttccaatatggttgctactgccctagctaaacagg |
26946248 |
T |
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| Q |
257 |
tta |
259 |
Q |
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||| |
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| T |
26946247 |
tta |
26946245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 26954337 - 26954273
Alignment:
| Q |
20 |
atgagtctcattgataccgctgttgttggtcaaggaagttcaattgaacttgctgctttaggtat |
84 |
Q |
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||||| ||||| ||||| |||||||||||||| |||||||||| || ||||||||||||||||| |
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| T |
26954337 |
atgagcctcatagatactgctgttgttggtcagggaagttcaaccgagcttgctgctttaggtat |
26954273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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