View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11691_low_2 (Length: 804)
Name: NF11691_low_2
Description: NF11691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11691_low_2 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 727; Significance: 0; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 727; E-Value: 0
Query Start/End: Original strand, 20 - 793
Target Start/End: Complemental strand, 336974 - 336200
Alignment:
| Q |
20 |
gaatgctcgctgcacttgttggggatgcatgactattggaacttccaacattgctcacagttgaagttgaactcttaccatcagcatcctatcagtaaaa |
119 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
336974 |
gaatgctcgctgcacttgttggagatgcatgactattggaacttccagcattgctcacagttgaagtcgaactcttaccatcagcatcctatcagtaaaa |
336875 |
T |
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| Q |
120 |
atatattccttaaagttcgaaggaaaattcacaaagtctgcaattactgaattgatctaccttgttattgacttgattgtaatcagcaccagggatgtcg |
219 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
336874 |
atatattccttaaagttcaaaggaaaattcacaaagcctgcaattactgaattgatctaccttgttattgacttgattgtaatcagcaccagggatgtcg |
336775 |
T |
|
| Q |
220 |
agtcttggatgatcagattcaccatttactacaaatgaacgaacatattcaaaggaaaaaataaatgccattaaaaacatgagatgcaaatgaatgacta |
319 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
336774 |
agtcttggatgatcagattcaccatttactacaaaagaacgaacatattcaaaggaaaaaataaatgccattaaaaacatgagatgcaaatgaatgacta |
336675 |
T |
|
| Q |
320 |
gacagaaattttgagcaaaatcatgtgtaccagcacaagaaggtaaatgagctctagatggaagtttagatggaagtaatgaaaccgtctgatttggatt |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
336674 |
gacagaaattttgagcaaaatcatgtgtaccagcacaagaaggtaaatgagctctagatggaagtttagatggaagtaatgaaaccgtctgatttggatt |
336575 |
T |
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| Q |
420 |
ttttgacggacttctattctctgattgattccaatcctcacgtttagtctcgttgttagtatctgaagcaaaataagtgatcaccaattagtaaatgtgg |
519 |
Q |
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| T |
336574 |
ttttgacggacttctattgtctgattgattccaatcctcacgtttagtctcgttgttagtatctgaagcaaaataagtgatcaccaattagtaaatgtgg |
336475 |
T |
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| Q |
520 |
aattaaaaagtttcaaacttatctttgaggataatcatcaatgacatagaagaatcttgaaaaatactacgtagtacatgcagaaacattgaatttttgt |
619 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
336474 |
aattaaaaagtttcaaacttatctttgaggataatcatcaatgacacagaagaatcttgaaaaatactacgtagtacatgcagaaaaattgaatttttgt |
336375 |
T |
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| Q |
620 |
atttgcatttgagtactaatctctcgaataaactcttctgcttataa-aaaacaagtacgcactgaaatatctgcagcttatatcataaaaaagcattaa |
718 |
Q |
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| T |
336374 |
atttgcatttgagtactaatctctcgaataaactcttctgcttataaaaaaacaagtacgcactgaaatatctgcagcttatatcataaaaaagcattaa |
336275 |
T |
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| Q |
719 |
agagcccaaatagaactatatatagacgactattccatttacacagcatcgtcaaatatactatacctatgctac |
793 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
336274 |
agagcccaaatagaactaaatatagacgactattccatttacacagcatcgtcaaatatactatacctatgctac |
336200 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 342 - 383
Target Start/End: Complemental strand, 42171934 - 42171893
Alignment:
| Q |
342 |
atgtgtaccagcacaagaaggtaaatgagctctagatggaag |
383 |
Q |
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| T |
42171934 |
atgtgtaccagcaaaagagggtaaatgagctctagctggaag |
42171893 |
T |
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