View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11691_low_22 (Length: 247)
Name: NF11691_low_22
Description: NF11691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11691_low_22 |
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| [»] scaffold0027 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: scaffold0027 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 247
Target Start/End: Original strand, 62833 - 63072
Alignment:
| Q |
8 |
caaagggaatgtcaaaacttactgatagtttgagaatgatgttcatattatcctcttattatttgaaatatgtcgagaaaccaagcatccatttcagtca |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
62833 |
caaatggaatgtcaaaacttactgatagtttgagaatgatgttcatattatcctcttattatttgaaatatgtcgagaaaccaagcatccatttcagtca |
62932 |
T |
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| Q |
108 |
aagtttcacagcaaattgagcactactagttaggccattttttacagaaagagcgagcccacaagcagttgctgcaaccaagtttcagaatctttataac |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
62933 |
aagtttcacagcaaattgagcactactagttaggccattttttacagaaagagcgagccaacaagcagttgctgcaaccaagtttcagaatctttataac |
63032 |
T |
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| Q |
208 |
atgtcttgagaggatgtcgccgacaagaagccaaacatag |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
63033 |
atgtcttgagaggatgtcgccgacaagaagccaaacatag |
63072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 247
Target Start/End: Complemental strand, 21320966 - 21320727
Alignment:
| Q |
8 |
caaagggaatgtcaaaacttactgatagtttgagaatgatgttcatattatcctcttattatttgaaatatgtcgagaaaccaagcatccatttcagtca |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21320966 |
caaatggaatgtcaaaacttactgatagtttgagaatgatgttcatattatcctcttattatttgaaatatgtcgagaaaccaagcatccatttcagtca |
21320867 |
T |
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| Q |
108 |
aagtttcacagcaaattgagcactactagttaggccattttttacagaaagagcgagcccacaagcagttgctgcaaccaagtttcagaatctttataac |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
21320866 |
aagtttcacagcaaattgagcactactagttaggccattttttacagaaagagcgagccaacaagcagttgctgcaaccaagtttcagaatctttataac |
21320767 |
T |
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| Q |
208 |
atgtcttgagaggatgtcgccgacaagaagccaaacatag |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
21320766 |
atgtcttgagaggatgtcgccgacaagaagccaaacatag |
21320727 |
T |
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