View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11691_low_25 (Length: 228)
Name: NF11691_low_25
Description: NF11691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11691_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 39577095 - 39576894
Alignment:
| Q |
22 |
aaatgatgatgatttattaaaaagggtcaaagaataaatattgcagttgaatcaaattacacatttaaaggccaaataaaattctgcatatactctttat |
121 |
Q |
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| T |
39577095 |
aaatgatgatgatttattaaaaagggtcaaagaataaatattgcagtggaatcaaattacacatttaaaggccaaataaaattctgcatatactctttat |
39576996 |
T |
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| Q |
122 |
gtatcaaatgaaagtgaaggatgagaatatagaaattcaggagatatttctgacaaaaaccaaatagagaaagcaaggcataatgagttgctcacaccct |
221 |
Q |
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| T |
39576995 |
gtatcagatgaaagtgaaggatgagaatatagaaattcaggagatatttctgacaaaaaccaaatagagaaagcaaggcataatgagttgctcacaccct |
39576896 |
T |
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| Q |
222 |
ct |
223 |
Q |
| |
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|| |
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| T |
39576895 |
ct |
39576894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 22 - 182
Target Start/End: Complemental strand, 39573476 - 39573316
Alignment:
| Q |
22 |
aaatgatgatgatttattaaaaagggtcaaagaataaatattgcagttgaatcaaattacacatttaaaggccaaataaaattctgcatatactctttat |
121 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||| ||| ||| ||| |
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| T |
39573476 |
aaatgatgatgattaattaaaaagggtcaaagaataaatattgcagtggaatcaaattacacagttaaaggccaaataaaattttgcacatattctgtat |
39573377 |
T |
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| Q |
122 |
gtatcaaatgaaagtgaaggatgagaatatagaaattcaggagatatttctgacaaaaacc |
182 |
Q |
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|||||| || ||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39573376 |
gtatcagatcaaagtgaagaatgagaatatagaaattcacgagatatttctgacaaaaacc |
39573316 |
T |
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