View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11691_low_6 (Length: 472)
Name: NF11691_low_6
Description: NF11691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11691_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 19 - 457
Target Start/End: Original strand, 14983093 - 14983534
Alignment:
| Q |
19 |
acagttacgttcctggtggcgatgacacatttgttccaaaccctggctttgaggttccaaatcctggcagtggtggtggaggtggtagagctgcagaaac |
118 |
Q |
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| T |
14983093 |
acagttacgttcctggtggcgatgacacatttgttccaaaccctggctttgaggttccaaatcctggcagtggtggtggaggtggtagagctgcagaaac |
14983192 |
T |
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| Q |
119 |
agttaatccatgaat----------------gcaataactagacctagtttttgagtttgtgagcgtgtgattcttattaagatcgttttttactgcttt |
202 |
Q |
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| T |
14983193 |
agttaatccatgaattcactcatccatgaatgcaatagctagacctagtttttgagtttgtgagcgtgtgattcttattaagatcgttttttactgcttt |
14983292 |
T |
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| Q |
203 |
ctagccatgagaataagtgtgctagtactagatgtacacacactagtagcttgctacttgggatgtgtaagtggcttgtttaaatgttttgcagctggtt |
302 |
Q |
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| T |
14983293 |
ctagccatgagaataagtgtg-------------tacacacactagtagcttgctacttgggatgtgtaagtggcttgtttaaatgttttgcagctgttt |
14983379 |
T |
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| Q |
303 |
taatttaatattatgagtttaattgttcttcaaagtagttaaaaattactgtggagcatcattcaacaatttaacctcatgataattgtctataaaagaa |
402 |
Q |
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| T |
14983380 |
taatttaatattatgagtttaattgttcttcaaagtagttaaaaattactgtggagcatcattcagcaatttaacctcatgataattgtctataaaagaa |
14983479 |
T |
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| Q |
403 |
ggaatatatggtagtataaaacacaacctaaaaatattcttcatttattttgatg |
457 |
Q |
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| T |
14983480 |
ggaatatatggtagtataaaacacaacctaaaaatattcttcatttattttgatg |
14983534 |
T |
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Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 14967011 - 14967094
Alignment:
| Q |
21 |
agttacgttcctggtggcgatgacacatttgttccaaaccctggctttgaggttccaaatcctggcagtggtggtggaggtggt |
104 |
Q |
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| T |
14967011 |
agttatgttcccggtggcgatgacacatttgttccaaaccctggctttgaggttccaaatcccagcagtggtggtggcggtggt |
14967094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 38268088 - 38268014
Alignment:
| Q |
22 |
gttacgttcctggtggcgatgacacatttgttccaaaccctggctttgaggttccaaatcctggcagtggtggtg |
96 |
Q |
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| T |
38268088 |
gttatgttccaggtggtgatgacacctttatccctaatcctggtgttgaggttccaattcctggcagtggtggtg |
38268014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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