View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11691_low_7 (Length: 467)
Name: NF11691_low_7
Description: NF11691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11691_low_7 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 66 - 467
Target Start/End: Original strand, 3607021 - 3607417
Alignment:
| Q |
66 |
attgaaattgaggtagctattgcaattccaaatgaatataaagttgagtnnnnnnnnn-gcaaattccaatccaaattcgaaccgaatgagcaacttgat |
164 |
Q |
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| T |
3607021 |
attgaaattgaggtagctattgcaattccaaatgaatataaagttgagtaaaaaaaaatgcaaattccaatccaaattcgaaccgaatgagcaacttgat |
3607120 |
T |
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| Q |
165 |
aagatgtggttcctcttgcaagaatataaatgtgtgt--catcatattagtttggtcttttatcgacttcaaactttccaaagttaatttataccttata |
262 |
Q |
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| T |
3607121 |
aatacgtggttcctcttgcaagaatataaatgtgtgtgtcatcatattagtttggtcttttatcgacttcaaactttccaaagtt----tataccttata |
3607216 |
T |
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| Q |
263 |
agttaagctaagtacctctttactactcaagaattatgatcctaaactcatatgatactatcacagttggttttgaatctagtttaaagacaatattgtt |
362 |
Q |
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| T |
3607217 |
agttaagcta----cctctttactactcaagaattacgatcctaaactcatatgatactatcacagttagttttgaatctagtttaaagacaatattgtt |
3607312 |
T |
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| Q |
363 |
gagatgcaattattttgtccgttgaatagcaaaccattgttaaaggctttaccttagaaggaaatggatatgtcacatgtctattagcaaatggaataga |
462 |
Q |
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| T |
3607313 |
gagatgcaattattttgtccgttgaatagcaaaccattgttaaaggctttaccttagaaggaaatggatatgtcacatgtctattagcaaatggaataga |
3607412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 3606968 - 3606999
Alignment:
| Q |
17 |
aattttaagatgaagtaaatatattgtattag |
48 |
Q |
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| T |
3606968 |
aattttaagatgaagtaaatatattgtattag |
3606999 |
T |
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