View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11691_low_8 (Length: 465)
Name: NF11691_low_8
Description: NF11691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11691_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Original strand, 38258930 - 38259381
Alignment:
| Q |
1 |
tcacaaaaaggaaaacaaacaaccacacaaaaagacggatggagaaaatggttgaaatgaatctagtgtattttatgtcatgtatatgtatggaagaagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38258930 |
tcacaaaaaggaaaacaaacaaccacacaaaaagacggatggagaaaatggttgaaatgaatctagtgtattttatgtcacgtatatgtatggaagaagg |
38259029 |
T |
|
| Q |
101 |
tgaaaactgaatagggtcttgtaatgcagggttggacactttatgagatactaaaatatgtgtctgaacacaattggattgcatacgagcattctttaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
38259030 |
tgaaaactgaatagggtcttgtaatgcagggttggacactttatgagatactaaaatatgtgcctgaacacaattgaattgcatacgagcattctctaaa |
38259129 |
T |
|
| Q |
201 |
agcaaatccagttttagctaaaatggcaataagtggagttgtctactcaattggagattggattgctcaggaatgtttcttactggcaagatttatgaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38259130 |
agcaaatccagttttagctaaaatggcaataagtggagttgtctactcaattggagattggattgctcaggaatgtttcttactggcaagatttatgaaa |
38259229 |
T |
|
| Q |
301 |
tgcttaagttgcaca-gannnnnnnnnnatcaactcttataagttatatccgaaatacaactttacgaggctattcaaatttgatcttgttggatttact |
399 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
38259230 |
tgcttaagttgcacaggtttttttttttatcaactcttataagttatatccgaaatacaactttacgaggctattcaaatttggtcttgttggatttgct |
38259329 |
T |
|
| Q |
400 |
ctccatggatctcttcctcgctattactaccaactttgcgaggaaattaatg |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38259330 |
ctccatggatctcttcctcgctattactaccaactttgcgaggtaattaatg |
38259381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 41 - 278
Target Start/End: Original strand, 38238814 - 38239047
Alignment:
| Q |
41 |
ggagaaaatggttgaaatgaatctagtgtattttatgtcatgtatatgtatggaagaaggtgaaaactgaatagggtcttgtaatgcagggttggacact |
140 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||| ||| |||| |||||||||| |||||||||| |||||| | |||| |||||||||||||| |
|
|
| T |
38238814 |
ggagaagatggttgaattgaatctagtgtattttctgtattgta----aatggaagaagttgaaaactgattagggtttcataattcagggttggacact |
38238909 |
T |
|
| Q |
141 |
ttatgagatactaaaatatgtgtctgaacacaattggattgcatacgagcattctttaaaagcaaatccagttttagctaaaatggcaataagtggagtt |
240 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||| || ||||| ||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38238910 |
ttatgagatactgaaatatgtgcctgaacacaattggattgcctatgagcaatctctgaaagcaaatccagttttagctaaaatggcaataagtggagtt |
38239009 |
T |
|
| Q |
241 |
gtctactcaattggagattggattgctcaggaatgttt |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38239010 |
gtctactcaattggagattggattgctcaggtatgttt |
38239047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 384 - 434
Target Start/End: Original strand, 38239186 - 38239236
Alignment:
| Q |
384 |
tcttgttggatttactctccatggatctcttcctcgctattactaccaact |
434 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
38239186 |
tcttgttgggtttactctccatggatctctttctcactattactaccaact |
38239236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University