View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11692_high_2 (Length: 409)
Name: NF11692_high_2
Description: NF11692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11692_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 159 - 395
Target Start/End: Original strand, 25720751 - 25720987
Alignment:
| Q |
159 |
gcttgtgtatttacactattcaaagtatttcttatcagatatttttattataaagtttacctttggattgaaagttactattaattagattatactaaca |
258 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
25720751 |
gcttgtgtatttacactattcaaaatatttcttatcagatatttttattataaagtttacctttggattgaaagttactattaattagattatacgtaca |
25720850 |
T |
|
| Q |
259 |
aaagtttacattaatataaaagcattttatatgtcaataagttatgtcaaaatgaatgtattctgcacttttgtctgtaacatttgatcttcattttaca |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
25720851 |
aaagtttacattaatataaaagcattttatatgtcaataagttatgtcaaaatgaatgtattctgcacttttgtttgtaacatttgattttcattttaca |
25720950 |
T |
|
| Q |
359 |
aattcaaaaacaacacctatagtttaatgatgttttt |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25720951 |
aattcaaaaacaacacctatagtttaatgatgttttt |
25720987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 25720567 - 25720704
Alignment:
| Q |
1 |
ttgaggaagcttttattgagcatcaacaacgatttagggacaaagtggatacatggaaggatgctctaactcaagtagctggactgtcaggatgggattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25720567 |
ttgaggaagcttttattgagcatcaacagcgatttagggacaaagtggatacatggaaggatgctctaactcaagtagctggactgtcaggatgggattc |
25720666 |
T |
|
| Q |
101 |
acaagtaaccaggtaactaatcaatttacatggtctca |
138 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25720667 |
acaagtaaccgggtaactaatcaatttacatggtctca |
25720704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 114
Target Start/End: Original strand, 37928138 - 37928246
Alignment:
| Q |
6 |
gaagcttttattgagcatcaacaacgatttagggacaaagtggatacatggaaggatgctctaactcaagtagctggactgtcaggatgggattcacaag |
105 |
Q |
| |
|
||||||||| || ||||||||||||||| ||| || |||||| ||||||| |||||||| |||||||||||||| ||||| ||||||||||||| |
|
|
| T |
37928138 |
gaagcttttgttaagcatcaacaacgatatagctgcagagtggacgagtggaaggctgctctaaaccaagtagctggactctcaggctgggattcacaag |
37928237 |
T |
|
| Q |
106 |
taaccaggt |
114 |
Q |
| |
|
||||||||| |
|
|
| T |
37928238 |
taaccaggt |
37928246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University