View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11692_low_1 (Length: 776)

Name: NF11692_low_1
Description: NF11692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11692_low_1
NF11692_low_1
[»] chr6 (6 HSPs)
chr6 (1-758)||(35173532-35174286)
chr6 (297-364)||(1579530-1579597)
chr6 (123-225)||(11538467-11538564)
chr6 (123-225)||(11563977-11564074)
chr6 (33-82)||(11538413-11538461)
chr6 (33-82)||(11563923-11563971)
[»] chr3 (3 HSPs)
chr3 (361-729)||(18259861-18260230)
chr3 (304-356)||(51859016-51859068)
chr3 (305-344)||(11758863-11758902)
[»] chr7 (4 HSPs)
chr7 (297-364)||(15736778-15736845)
chr7 (297-352)||(12962670-12962725)
chr7 (305-352)||(13931843-13931890)
chr7 (305-344)||(26336616-26336655)
[»] chr5 (1 HSPs)
chr5 (298-364)||(11233279-11233345)
[»] chr4 (1 HSPs)
chr4 (296-356)||(26885843-26885903)
[»] chr8 (2 HSPs)
chr8 (296-352)||(34909097-34909153)
chr8 (305-352)||(32057272-32057319)
[»] chr2 (2 HSPs)
chr2 (297-356)||(31469354-31469413)
chr2 (298-352)||(15570079-15570133)


Alignment Details
Target: chr6 (Bit Score: 682; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 682; E-Value: 0
Query Start/End: Original strand, 1 - 758
Target Start/End: Original strand, 35173532 - 35174286
Alignment:
Q  1 tgctagtaaactcattagaaatattactgtgttgttcattacatctttaaagttgttagatacattgattgttgttcaccacaaaaaagaatttttgatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35173532 tgctagtaaactcattagaaatattactgtgttgttcattacatctttaaagttgttagatacattgattgttgttcaccacaaaaaagaatttttgatg 35173631  T
Q  101 ccctgaggctgaagtagtacctctaattgaagctaaggtgctaaagggtgtgtaagcaaagcattcatgtgtgttagcttaagccctcattttaatctta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35173632 ccctgaggctgaagtagtacctctaattgaagctaaggtgctaaagggtgtgtaagcaaagcattcatgtgtgttagcttaagccctcattttaatctta 35173731  T
Q  201 atattttgaccttaagtttgttgcaccaattttgagttattttatgtcctgagttttgtgtgccagcacgattatttccttaaaagatgcctgagagggt 300  Q
    |||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  35173732 atatt--gaccttaagtttgttgcaccaaatttgagttattttatgtcctgagttttgtgtgccagcacgattatttccttaaaagatgcctgacagggt 35173829  T
Q  301 gaggtttagcatgcacaaggaaaagatttatgctccatgcacaagttgtgcaaattagtgctgataactcgtataaactaagctttggatgtagttgaca 400  Q
    ||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35173830 gaggtttagcatgcataaggaaaagatttgtgctccatgcacaggttgtgcaaattagtgctgataactcgtataaactaagctttggatgtagttgaca 35173929  T
Q  401 tatatctaatcatatttcagagtcaaaatttgtgtagctactttaggaaataacaacaagacatgatactatcgtaaaatatgattggaagcctgtttaa 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35173930 tatatctaatcatatttcagagtcaaaatttgtgtagctactttaggaaataacaacaagacatgatactatcgtaaaatatgattggaagcctgtttaa 35174029  T
Q  501 aacttttttacattgctagtacacacagttattaaattcttacaataaatatgaactttggattataagnnnnnnnnncatgagacagagcaaaataaag 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||  ||||||||||||    
T  35174030 aacttttttacattgctagtacacacagttattaaattcttacaataaatatgaactttggattataagaaaaaaaaacatgagac--agcaaaataaag 35174127  T
Q  601 acacggattaaagaaagtctattgaaataaccaaacaggcaacatgtgcttagtcatg-aagaaaggcacgaggaacaaaaaagaatcaacatcattcaa 699  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  35174128 acacggattaaagaaagtctattgaaataaccaaacaggcaacatgtgcttagtcatgaaagaaaggcacgaggaacaaaaaagaatcaacatcattcaa 35174227  T
Q  700 ttgaaccgcagaaccaaatattacaaccataaaggttttttcagattttaaggccagac 758  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35174228 ttgaaccgcagaaccaaatattacaaccataaaggttttttcagattttaaggccagac 35174286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 297 - 364
Target Start/End: Complemental strand, 1579597 - 1579530
Alignment:
Q  297 gggtgaggtttagcatgcacaaggaaaagatttatgctccatgcacaagttgtgcaaattagtgctga 364  Q
    ||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  1579597 gggtggggtttagcatgcacaagggaaagatttgtgctccatgcacaagttgtgcaaattagtgctga 1579530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 123 - 225
Target Start/End: Original strand, 11538467 - 11538564
Alignment:
Q  123 ctaattgaagctaaggtgctaaagggtgtgtaagcaaagcattcatgtgtgttagcttaagccctcattttaatcttaatattttgaccttaagtttgtt 222  Q
    ||||||||||| |||||||||||||||||||     ||| || ||||||| ||||||||| ||||| ||||||| | ||||||| |||||||| ||||||    
T  11538467 ctaattgaagccaaggtgctaaagggtgtgt-----aagtatgcatgtgttttagcttaaaccctctttttaatgtcaatatttcgaccttaaatttgtt 11538561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 123 - 225
Target Start/End: Original strand, 11563977 - 11564074
Alignment:
Q  123 ctaattgaagctaaggtgctaaagggtgtgtaagcaaagcattcatgtgtgttagcttaagccctcattttaatcttaatattttgaccttaagtttgtt 222  Q
    ||||||||||| |||||||||||||||||||     ||| || ||||||| ||||||||| ||||| ||||||| | ||||||| |||||||| ||||||    
T  11563977 ctaattgaagccaaggtgctaaagggtgtgt-----aagtatgcatgtgttttagcttaaaccctctttttaatgtcaatatttcgaccttaaatttgtt 11564071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 11538413 - 11538461
Alignment:
Q  33 tgttcattacatctttaaagttgttagatacattgattgttgttcaccac 82  Q
    |||||||||||| ||||||||||||||| ||||||| |||||||||||||    
T  11538413 tgttcattacat-tttaaagttgttagaaacattgaatgttgttcaccac 11538461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 11563923 - 11563971
Alignment:
Q  33 tgttcattacatctttaaagttgttagatacattgattgttgttcaccac 82  Q
    |||||||||||| ||||||||||||||| ||||||| |||||||||||||    
T  11563923 tgttcattacat-tttaaagttgttagaaacattgaatgttgttcaccac 11563971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 361 - 729
Target Start/End: Original strand, 18259861 - 18260230
Alignment:
Q  361 ctgataactcgtataaactaagctttggatgtagttgacatatatctaatcatatttcagagtcaaaatttgtgtagctactttaggaaataacaacaag 460  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  18259861 ctgataactcgtataaactaagctttggatctagttgacatatatcaaatcatatttcagagtcgaaatttgtgtagctactttaggaaataacaacaag 18259960  T
Q  461 acatgatactatcgtaaaatatgattggaagcctgtttaaaacttttttacattgctagtacacacagttattaaattcttacaataaatatgaactttg 560  Q
    |||||||||| ||||||||||||||| || |||||||||||||||||||||||||| |||||||| |||||||||| |||| ||||||||||||||||||    
T  18259961 acatgatactgtcgtaaaatatgattcgacgcctgtttaaaacttttttacattgccagtacacatagttattaaactcttgcaataaatatgaactttg 18260060  T
Q  561 gattataagnnnnnnnnncatgagacagagcaaaataaagacacggattaaagaaagtctattgaaataaccaaacaggcaacatgtgcttagtcatg-a 659  Q
    | |||||||          || ||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||| |    
T  18260061 gtttataagaaaacataatatcagacacagcaaaataaagacacggattaaagaaagtctattcaaataatcaaacaggcaacatgtgcttagccatgaa 18260160  T
Q  660 agaaaggcacgaggaacaaaaaagaatcaacatcattcaattgaaccgcagaaccaaatattacaaccat 729  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18260161 agaaaggcacgaggaacaaaaaagaatcaacatcattcaattgaaccgcagaaccaaatattataaccat 18260230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 304 - 356
Target Start/End: Complemental strand, 51859068 - 51859016
Alignment:
Q  304 gtttagcatgcacaaggaaaagatttatgctccatgcacaagttgtgcaaatt 356  Q
    ||||||||||||||||| |||||||| ||| ||||||||||||||||||||||    
T  51859068 gtttagcatgcacaagggaaagatttgtgcaccatgcacaagttgtgcaaatt 51859016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 305 - 344
Target Start/End: Original strand, 11758863 - 11758902
Alignment:
Q  305 tttagcatgcacaaggaaaagatttatgctccatgcacaa 344  Q
    ||||||||||||||||||||||||| ||| ||||||||||    
T  11758863 tttagcatgcacaaggaaaagatttgtgcaccatgcacaa 11758902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 8e-23; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 297 - 364
Target Start/End: Original strand, 15736778 - 15736845
Alignment:
Q  297 gggtgaggtttagcatgcacaaggaaaagatttatgctccatgcacaagttgtgcaaattagtgctga 364  Q
    ||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  15736778 gggtggggtttagcatgcacaagggaaagatttgtgctccatgcacaagttgtgcaaattagtgctga 15736845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 297 - 352
Target Start/End: Complemental strand, 12962725 - 12962670
Alignment:
Q  297 gggtgaggtttagcatgcacaaggaaaagatttatgctccatgcacaagttgtgca 352  Q
    ||||| ||||||||||||| ||||||||||||| ||| ||||||| ||||||||||    
T  12962725 gggtggggtttagcatgcataaggaaaagatttgtgcaccatgcaaaagttgtgca 12962670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 13931890 - 13931843
Alignment:
Q  305 tttagcatgcacaaggaaaagatttatgctccatgcacaagttgtgca 352  Q
    |||||||||||||||| |||||||| ||| |||||||||| |||||||    
T  13931890 tttagcatgcacaagggaaagatttgtgcaccatgcacaacttgtgca 13931843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 305 - 344
Target Start/End: Complemental strand, 26336655 - 26336616
Alignment:
Q  305 tttagcatgcacaaggaaaagatttatgctccatgcacaa 344  Q
    ||||||||||||||||||||||||| ||| ||||||||||    
T  26336655 tttagcatgcacaaggaaaagatttgtgcaccatgcacaa 26336616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 298 - 364
Target Start/End: Original strand, 11233279 - 11233345
Alignment:
Q  298 ggtgaggtttagcatgcacaaggaaaagatttatgctccatgcacaagttgtgcaaattagtgctga 364  Q
    |||| |||||||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||||    
T  11233279 ggtggggtttagcatgcacaagggaaagatttgtgctccgtgcacaaattgtgcaaattagtgctga 11233345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 296 - 356
Target Start/End: Original strand, 26885843 - 26885903
Alignment:
Q  296 agggtgaggtttagcatgcacaaggaaaagatttatgctccatgcacaagttgtgcaaatt 356  Q
    |||||| |||||||||||||||||| |||||||| ||| ||||||||||||||||||||||    
T  26885843 agggtggggtttagcatgcacaagggaaagatttgtgcaccatgcacaagttgtgcaaatt 26885903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 296 - 352
Target Start/End: Complemental strand, 34909153 - 34909097
Alignment:
Q  296 agggtgaggtttagcatgcacaaggaaaagatttatgctccatgcacaagttgtgca 352  Q
    |||||| |||||||||||||||||| |||||||| ||| ||||||||||||||||||    
T  34909153 agggtggggtttagcatgcacaagggaaagatttgtgcaccatgcacaagttgtgca 34909097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 32057272 - 32057319
Alignment:
Q  305 tttagcatgcacaaggaaaagatttatgctccatgcacaagttgtgca 352  Q
    |||||||||||||||| |||||||| ||| |||||||||| |||||||    
T  32057272 tttagcatgcacaagggaaagatttgtgcaccatgcacaacttgtgca 32057319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 297 - 356
Target Start/End: Complemental strand, 31469413 - 31469354
Alignment:
Q  297 gggtgaggtttagcatgcacaaggaaaagatttatgctccatgcacaagttgtgcaaatt 356  Q
    ||||| ||||||  ||||||||||||||||||| ||| ||||||| ||||||||||||||    
T  31469413 gggtggggtttacaatgcacaaggaaaagatttgtgcaccatgcaaaagttgtgcaaatt 31469354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 298 - 352
Target Start/End: Original strand, 15570079 - 15570133
Alignment:
Q  298 ggtgaggtttagcatgcacaaggaaaagatttatgctccatgcacaagttgtgca 352  Q
    |||| |||||||||||||||||| |||||||| ||| ||||||| ||||||||||    
T  15570079 ggtggggtttagcatgcacaagggaaagatttgtgcaccatgcataagttgtgca 15570133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University