View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11692_low_2 (Length: 596)
Name: NF11692_low_2
Description: NF11692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11692_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 503; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 15 - 583
Target Start/End: Original strand, 27559543 - 27560121
Alignment:
| Q |
15 |
acatcatgataatcaacaagcggtacatgaaataataaggcaaaggaatgaagacaggaggtcagggagaaacagcagcttttaaacacgggcaaggcgn |
114 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27559543 |
acatcattataatcaacaagcggtacataaaataataaggcaaaggaatgaagacaggaggtcagggagaaacagcagcttttaaacacgggcaaggcga |
27559642 |
T |
|
| Q |
115 |
nnnnnngagggaaataacaaacattctagagactggaactatgcattctgttaaagagcaagaatttgaatatcttgtagtaaagagaaagaggtttttt |
214 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27559643 |
aaaaaagagggaaataacaaacattctagagactggaactatgcattctgttaaagagcaaaaatttgaatatcttgtagtaaagagaaagaggtttttt |
27559742 |
T |
|
| Q |
215 |
attaacatccaacataaaatttggcaagcacaacagccacagacaggtgcttcttttcactacttagaacaacaagtccaataataacattaactagact |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27559743 |
attaacatccaacataaaatttggcaagcacaacagccacagacaggtgcttcttttcattacttagaacaacaagtccaataataacattaactagact |
27559842 |
T |
|
| Q |
315 |
aaactctgccactactgaacaacctctgataagcatacctttttctgatgatcctccaggccatacattcccagaacaaattccaactcctgattctcct |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
27559843 |
aaactctgccactactgaacaacctctgataagcatacctttttctgatgatcctccaggccatacatttccagaacaaattccaactcctgattctcct |
27559942 |
T |
|
| Q |
415 |
cctgtaacttttcaatctgtaacaaaacaccttaatgagttgtttgaaattatagacaatcttgaaggcctctaaaatcacaatgcagataatgtttgag |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27559943 |
cctgtaacttttcaatctgtaacaaaacaccttaatgagttgtttgaaattatagacaatcttgaaggcctctaaaatcacaatgcagataatgtttgag |
27560042 |
T |
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| Q |
515 |
aaatatggaaagtataggagcagatacacatg----------caaaacaaaggaaaagaaaaacattgcaatcaaattc |
583 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27560043 |
aaatatggaaagtataggagcagatacacatgcaaaacacaacaaaacaaaggaaaagaaaaacattgcaatcaaattc |
27560121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 279 - 555
Target Start/End: Original strand, 36667371 - 36667645
Alignment:
| Q |
279 |
tagaacaacaagtccaataataacattaactagactaaactctgccactactgaacaacctctgataagcatacctttttctgatgatcctccaggccat |
378 |
Q |
| |
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||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||| || ||| |||||||||||| ||||| ||||||||| |||| |
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| T |
36667371 |
tagaataacgagtccaataattacattaactagactaaactctgccactactgaacaacttcagatcagcatacctttt-ctgataatcctccagaccat |
36667469 |
T |
|
| Q |
379 |
acattcccagaacaaattccaactcctgattctcctcctgtaacttttcaatctgtaacaaaacaccttaatgagttgtttgaaattatagacaatcttg |
478 |
Q |
| |
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|||| ||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36667470 |
acatatccaaaacaaattctaactcctggttctcctcctgtaacttttcaatctgtaacaaaacaccttaatgagttgtttgaaattagagacaatctt- |
36667568 |
T |
|
| Q |
479 |
aaggcctctaaaatcacaatgcagataatgtttgagaaatatggaaagtataggagcagatacacatgcaaaacaaa |
555 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
36667569 |
aaggcctctaaaatcagaatgcagataatgtttgagaatcatggaaagtatagttgcagatacacatgcaaaacaaa |
36667645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 155; Significance: 5e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 279 - 579
Target Start/End: Original strand, 29409207 - 29409518
Alignment:
| Q |
279 |
tagaacaacaagtccaataataacattaactagactaaactctgccactactgaacaacctctgataagcatacctttttctgatgatcctccaggccat |
378 |
Q |
| |
|
||||| |||||||| || ||| |||||||||||||||| ||||||||||||||||||||| | ||| |||||||||||| ||||| ||| || ||||||| |
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| T |
29409207 |
tagaataacaagtcaaaaaattacattaactagactaagctctgccactactgaacaaccccagatcagcatacctttt-ctgataatcttctaggccat |
29409305 |
T |
|
| Q |
379 |
acattcccagaacaaattccaactcctgattctcctcctgtaacttttcaatctgtaacaaaacaccttaatgagttgtttgaaa-----ttatagacaa |
473 |
Q |
| |
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|||| ||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||| |
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| T |
29409306 |
acatatccaaaacaaattctaactcccgattctcctcctgtaacttttcaatctgtaacaaaacatcttaatgagttggttgaaaattagttatagacaa |
29409405 |
T |
|
| Q |
474 |
tcttgaaggcctctaaaatcacaatgcagataatgtttgagaaatatggaaagtataggagcagatacacatg-------caaaacaaaggaaaagaaaa |
566 |
Q |
| |
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||||||||||| ||||||||| |||||| |||||||||||||| ||||||| |||||| ||||||||||| | |||||||||||||||||||| |
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| T |
29409406 |
tcttgaaggccactaaaatcataatgcatataatgtttgagaatcatggaaaatataggtgcagatacacaagcaaaacacaaaacaaaggaaaagaaaa |
29409505 |
T |
|
| Q |
567 |
acattgcaatcaa |
579 |
Q |
| |
|
||||||||||||| |
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| T |
29409506 |
acattgcaatcaa |
29409518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 63 - 280
Target Start/End: Original strand, 29408930 - 29409160
Alignment:
| Q |
63 |
tgaagacaggaggtcagggagaaacagcagcttttaaacacgggcaaggcgnnnnnnngagggaaataacaaacattctagagactggaacta------- |
155 |
Q |
| |
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|||| ||||||||||||||| || |||| | ||||||||| |||||||| | |||||||||||| | |||||||||||||||||||| |
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| T |
29408930 |
tgaatacaggaggtcagggacaatcagcggattttaaacatgggcaaggggaaaaaatgagggaaataactagcattctagagactggaactagtatgac |
29409029 |
T |
|
| Q |
156 |
------tgcattctgttaaagagcaagaatttgaatatcttgtagtaaagagaaagaggttttttattaacatccaacataaaatttggcaagcacaaca |
249 |
Q |
| |
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|||||||||||||| ||||| || |||||| ||||||| |||||||||||||||||| |||||||| |||||||||||||| |||||||||| |
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| T |
29409030 |
attatctgcattctgttaaaaagcaaaaacttgaatctcttgtaacaaagagaaagaggtttttagttaacatctaacataaaatttggtaagcacaaca |
29409129 |
T |
|
| Q |
250 |
gccacagacaggtgcttcttttcactactta |
280 |
Q |
| |
|
||||||| | |||||||||||||| |||||| |
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|
| T |
29409130 |
gccacaggcgggtgcttcttttcaatactta |
29409160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 156 - 250
Target Start/End: Complemental strand, 24203719 - 24203625
Alignment:
| Q |
156 |
tgcattctgttaaagagcaa-gaatttgaatatcttgtagtaaagagaaagaggttttttattaacatccaacataaaatttggcaagcacaacag |
250 |
Q |
| |
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||||||||||||| ||||| |||||| || ||||||||| || ||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
24203719 |
tgcattctgttaataagcaaagaattt-aacatcttgtagcaatgagaaagaggttttttattaacatctaacataaaatttggaaagcacaacag |
24203625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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