View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11693_high_12 (Length: 263)
Name: NF11693_high_12
Description: NF11693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11693_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 58 - 247
Target Start/End: Complemental strand, 12959156 - 12958967
Alignment:
| Q |
58 |
tctcctttaatattattatgatatgtaaattgggttgaacgaaattaaggataatattaatgaggtaacgctttgaaaagaacagaaggactgaaacaga |
157 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12959156 |
tctcctttaatattactataatatgtaaattgggttgaacgaaattaaggataatattaatgaggtaacgctttgaaaagaacagaaggactgattcaga |
12959057 |
T |
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| Q |
158 |
atcaattatacaaaaacataatataaacacacataatttatccatttaaattgccctaaattgaagaagaatagctattcgagttgtttc |
247 |
Q |
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| T |
12959056 |
atcaattatacaaaaacataatataaacacacataatttatccatttaaattgccctaaattgaagaagaatagctattcgagttgtttc |
12958967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 58 - 247
Target Start/End: Complemental strand, 37868496 - 37868307
Alignment:
| Q |
58 |
tctcctttaatattattatgatatgtaaattgggttgaacgaaattaaggataatattaatgaggtaacgctttgaaaagaacagaaggactgaaacaga |
157 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || | |
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| T |
37868496 |
tctcctttaatattactataatatgtaaattgggttgaacgaaattaaggataatattaatgaggtaacgctttgaaaagaacagaaggaatgattcata |
37868397 |
T |
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| Q |
158 |
atcaattatacaaaaacataatataaacacacataatttatccatttaaattgccctaaattgaagaagaatagctattcgagttgtttc |
247 |
Q |
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| T |
37868396 |
atcaattatacaaaaacataatataaacacacataatttatccatttaaattgccctaaattgaagaagaatagctattcgagttgtttc |
37868307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 104 - 247
Target Start/End: Original strand, 10367800 - 10367943
Alignment:
| Q |
104 |
aaggataatattaatgaggtaacgctttgaaaagaacagaaggactgaaacagaatcaattatacaaaaacataatataaacacacataatttatccatt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10367800 |
aaggataatattaatgaggtaacgctttgaaaagaacagaaggactgattcaaaatcaattatacaaaaacataatataaacacacataatttatccatt |
10367899 |
T |
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| Q |
204 |
taaattgccctaaattgaagaagaatagctattcgagttgtttc |
247 |
Q |
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| T |
10367900 |
tagattgccctaaattgaagaagaatagctattcgagttgtttc |
10367943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 58 - 247
Target Start/End: Original strand, 29739014 - 29739203
Alignment:
| Q |
58 |
tctcctttaatattattatgatatgtaaattgggttgaacgaaattaaggataatattaatgaggtaacgctttgaaaagaacagaaggactgaaacaga |
157 |
Q |
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||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || | |
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| T |
29739014 |
tctcctttaatattaccataatatataaattgggttgaacgaaattaaggataatattaatgaggtaacactttgaaaagaacagaaggactgattcaaa |
29739113 |
T |
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| Q |
158 |
atcaattatacaaaaacataatataaacacacataatttatccatttaaattgccctaaattgaagaagaatagctattcgagttgtttc |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29739114 |
atcaattatacaaaaacataatataaacacacataatttatccatttaaattgccgtaaattgaagaagaatagctattcgagttgtttc |
29739203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 58 - 247
Target Start/End: Complemental strand, 5421881 - 5421702
Alignment:
| Q |
58 |
tctcctttaatattattatgatatgtaaattgggttgaacgaaattaaggataatattaatgaggtaacgctttgaaaagaacagaaggactgaaacaga |
157 |
Q |
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||||||||||||||| ||| ||||||||||||||| |||| | ||||||||||||||||| | ||||||||||||||||| || ||| |||| |
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| T |
5421881 |
tctcctttaatattactataatatgtaaattgggtcgaacaagattaaggataatattaa--------cactttgaaaagaacagaatgattgattcaga |
5421790 |
T |
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| Q |
158 |
atcaattatacaaaaacataatataaacacacataatttatccatttaaattgccctaaattgaagaagaatagctattcgagttgtttc |
247 |
Q |
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||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5421789 |
atcaactatacaaaaacataatataaacaca--taatttatccatttaaattgccctaaattgaagaagaatagctattcgagttgtttc |
5421702 |
T |
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