View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11693_high_2 (Length: 613)
Name: NF11693_high_2
Description: NF11693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11693_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 478; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 68 - 598
Target Start/End: Original strand, 41693345 - 41693875
Alignment:
| Q |
68 |
aatatatcataatcacgtgatccaccatgattttgacgttagcttgcagagtgtagcttggaaatcacggtggctcaccgtgatttagcataccaacgga |
167 |
Q |
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| T |
41693345 |
aatatatcataatcacgtgatccaccatgattttgacgttagcctgcagagtgtagcctggaaatcacggtggctcaccgtgatttggcataccaacgga |
41693444 |
T |
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| Q |
168 |
gatgccaaacttaagctaagcaaatacaaaagaaatagatgnnnnnnntaataaccaagcaaagtgagtgataatcacatgatcaaagtgcgagcatcga |
267 |
Q |
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| T |
41693445 |
gatgccaaacttaagctaagtaaatacaaaagaaagagatgaaaaaaataataaccaagcaaagtgagtgataatcacatgatcaaagtgcgagcattga |
41693544 |
T |
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| Q |
268 |
aagcgagtagaacatttcctcttgatcattttgcaagtcttgctcttcctgtgaagaagttgaattaattgaaggagtgacagtagcatgtgttgggaag |
367 |
Q |
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| T |
41693545 |
aagcgagtagaacatttcctcttgatcattttgcaagtcttgctcttcctgtgaagaagttgaattaattgaaggagtgacagtagcatgtgttgggaag |
41693644 |
T |
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| Q |
368 |
attaatcttaaagcacgttccattctttgtacagttgaaacttgaggttcactattgaaagctatttgactcaatctgaaaagaaacaattttgattggt |
467 |
Q |
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| T |
41693645 |
attaatcttaaagcacgttccattctttgtacagttgaaacttgaggttcattattgaaagctatttgactcaatctgaaaagaaacaattttgattggt |
41693744 |
T |
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| Q |
468 |
aaagtgcttcatctttgaagaatctaaaacccatcaacagcttgagcacacatatggtagttgaaaaaccagctactgcaggttttgctaattgtagatg |
567 |
Q |
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| T |
41693745 |
aaagtgcttcatctttgaagaatctaaaacccatcaacagcttgagcacacatatggtagttgaaaaaccagctactgcaggttttgctaattgcagatg |
41693844 |
T |
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| Q |
568 |
aagtttgagtagagttgctgcgtgcaaaacc |
598 |
Q |
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| T |
41693845 |
aagtttgagtagagttgctgcgtgcaaaacc |
41693875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 41693263 - 41693326
Alignment:
| Q |
9 |
aagcaaagggaaagaaagcataaactggtagtagtaataataagtataacaagaaattaaatat |
72 |
Q |
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| T |
41693263 |
aagcaaagggaaagaaagcataaactggtagtagtaataataagtataacaagaaattaaatat |
41693326 |
T |
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