View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11693_high_5 (Length: 439)
Name: NF11693_high_5
Description: NF11693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11693_high_5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 6 - 439
Target Start/End: Original strand, 38881601 - 38882033
Alignment:
| Q |
6 |
gatggacatcaacaatcatcatgccatagacgcaagagcactaaagtgacaaagag-tttctggaaacagtgtctattgcgtgtatttttaatatcatgg |
104 |
Q |
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| T |
38881601 |
gatggtcatcaacattcatcatgccatagacgcaagagcactaaagttacaaagaggtttctggaaacagtgtctattgcgtgtatgtttgacatcatgg |
38881700 |
T |
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| Q |
105 |
tgatatattatgtgaatattacgatgatttgattttatagaagctataaaatgtagtttttgnnnnnnntcacggcgtagtcacccagattctatcatac |
204 |
Q |
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| T |
38881701 |
tgatatattatgtgaatattacgatgatttgattttatagaagctataaaatgtagtttttaaaaaaaatcacggcgtagtcacccagattctatcatac |
38881800 |
T |
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| Q |
205 |
cagccatgatatcacgcatatggtatatattactttgagtcggtttactaggctaactgaacaccgcattagaaggaagtatatgcgggtggaatatttt |
304 |
Q |
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| T |
38881801 |
cagccatgatatgacgcatatggtatatattactttgagtcggttcacttggttaactgaacaccgcattagaaggaagtatatgcgggtggaatatttt |
38881900 |
T |
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| Q |
305 |
gtttgttgtgataagcttaaactcacatttatttcttgcatgtgtttttagttccttataaattgttgctactcccctccatctatttcgctcactcaca |
404 |
Q |
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| T |
38881901 |
gtttgttgtggtaagc-taaactcacatttatttcttgcatgtgtttttagttccttataaattgttgccact-ccctccatctatttcgctcactaaca |
38881998 |
T |
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| Q |
405 |
cattaacactgttctttctcttttaacttcattct |
439 |
Q |
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| T |
38881999 |
cattaacactgttctttctcttttaacttcattct |
38882033 |
T |
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