View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11693_low_1 (Length: 882)

Name: NF11693_low_1
Description: NF11693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11693_low_1
NF11693_low_1
[»] chr3 (27 HSPs)
chr3 (664-852)||(5366110-5366299)
chr3 (660-849)||(29100268-29100459)
chr3 (669-798)||(3328198-3328326)
chr3 (664-744)||(21353674-21353753)
chr3 (757-856)||(33386461-33386557)
chr3 (669-852)||(1417281-1417460)
chr3 (656-715)||(4386851-4386911)
chr3 (669-798)||(8126748-8126875)
chr3 (670-798)||(18552726-18552851)
chr3 (670-852)||(40592572-40592750)
chr3 (656-716)||(25517085-25517146)
chr3 (820-853)||(25517446-25517479)
chr3 (757-853)||(27986245-27986338)
chr3 (665-744)||(21156542-21156620)
chr3 (664-698)||(29196507-29196541)
chr3 (671-798)||(35925599-35925723)
chr3 (670-798)||(36029212-36029338)
chr3 (669-711)||(37466408-37466450)
chr3 (757-798)||(1306154-1306195)
chr3 (757-798)||(1736145-1736186)
chr3 (757-798)||(3715843-3715884)
chr3 (757-798)||(16264553-16264594)
chr3 (757-798)||(27453164-27453205)
chr3 (757-798)||(27974793-27974834)
chr3 (757-798)||(32143527-32143568)
chr3 (757-798)||(39032395-39032436)
chr3 (757-798)||(47923745-47923786)
[»] chr4 (12 HSPs)
chr4 (664-853)||(34670463-34670650)
chr4 (660-804)||(37781970-37782114)
chr4 (767-853)||(873316-873401)
chr4 (680-798)||(5112365-5112482)
chr4 (435-510)||(873731-873807)
chr4 (757-852)||(16623094-16623186)
chr4 (757-852)||(16628673-16628765)
chr4 (661-737)||(18912276-18912351)
chr4 (757-798)||(10047585-10047626)
chr4 (757-798)||(24334015-24334056)
chr4 (757-798)||(28468388-28468429)
chr4 (757-798)||(31985485-31985526)
[»] chr2 (17 HSPs)
chr2 (664-838)||(18674213-18674386)
chr2 (656-853)||(28770572-28770768)
chr2 (762-852)||(12632890-12632980)
chr2 (435-518)||(16388261-16388344)
chr2 (435-518)||(16388674-16388757)
chr2 (656-743)||(2869599-2869687)
chr2 (670-852)||(3278118-3278297)
chr2 (664-740)||(15903800-15903875)
chr2 (670-798)||(14698861-14698986)
chr2 (772-852)||(41586351-41586429)
chr2 (664-798)||(2837881-2838015)
chr2 (757-798)||(23078323-23078364)
chr2 (757-852)||(36757563-36757655)
chr2 (670-798)||(34388969-34389096)
chr2 (757-798)||(8040268-8040309)
chr2 (757-798)||(10445319-10445360)
chr2 (757-798)||(21630149-21630190)
[»] scaffold0002 (1 HSPs)
scaffold0002 (656-850)||(14785-14979)
[»] chr1 (30 HSPs)
chr1 (660-853)||(25116498-25116690)
chr1 (664-856)||(8281430-8281620)
chr1 (669-852)||(47098626-47098804)
chr1 (435-518)||(8281135-8281219)
chr1 (669-852)||(47102640-47102821)
chr1 (669-798)||(19073046-19073173)
chr1 (669-798)||(19120936-19121063)
chr1 (435-518)||(10996772-10996856)
chr1 (670-852)||(32889558-32889734)
chr1 (666-740)||(17345429-17345502)
chr1 (656-744)||(35109443-35109531)
chr1 (669-744)||(32736902-32736976)
chr1 (437-501)||(35109745-35109811)
chr1 (660-701)||(11032268-11032309)
chr1 (661-701)||(918428-918468)
chr1 (669-798)||(40816668-40816793)
chr1 (661-744)||(3019839-3019921)
chr1 (690-805)||(11031320-11031433)
chr1 (664-798)||(22819541-22819676)
chr1 (757-798)||(3281911-3281952)
chr1 (667-716)||(10997071-10997120)
chr1 (767-853)||(10997173-10997263)
chr1 (757-798)||(13598604-13598645)
chr1 (757-798)||(13604474-13604515)
chr1 (757-798)||(16124366-16124407)
chr1 (757-798)||(19358693-19358734)
chr1 (757-798)||(19361282-19361323)
chr1 (757-798)||(19366158-19366199)
chr1 (757-798)||(19379922-19379963)
chr1 (757-798)||(29652017-29652058)
[»] chr7 (20 HSPs)
chr7 (669-852)||(23402814-23402993)
chr7 (669-852)||(20284206-20284385)
chr7 (664-798)||(5817122-5817255)
chr7 (670-798)||(9185026-9185153)
chr7 (670-798)||(9189859-9189986)
chr7 (670-798)||(2580508-2580635)
chr7 (786-856)||(27984678-27984747)
chr7 (757-852)||(46516106-46516198)
chr7 (669-798)||(9235434-9235562)
chr7 (670-798)||(29159922-29160050)
chr7 (566-610)||(28617334-28617378)
chr7 (664-698)||(24526017-24526051)
chr7 (656-701)||(28617173-28617219)
chr7 (757-798)||(56153-56194)
chr7 (757-798)||(2479540-2479581)
chr7 (662-719)||(4162699-4162756)
chr7 (757-798)||(4796520-4796561)
chr7 (757-798)||(21640014-21640055)
chr7 (757-798)||(21646212-21646253)
chr7 (757-798)||(21983490-21983531)
[»] chr8 (17 HSPs)
chr8 (665-848)||(31513135-31513314)
chr8 (664-856)||(3051232-3051420)
chr8 (670-798)||(19752246-19752372)
chr8 (671-854)||(8863425-8863604)
chr8 (666-739)||(9054748-9054820)
chr8 (664-798)||(7493025-7493158)
chr8 (664-713)||(6813795-6813845)
chr8 (757-798)||(19175606-19175647)
chr8 (757-852)||(7412544-7412636)
chr8 (670-798)||(26403081-26403208)
chr8 (664-698)||(30291620-30291654)
chr8 (656-744)||(5990467-5990555)
chr8 (823-852)||(11712237-11712266)
chr8 (757-798)||(26288096-26288137)
chr8 (757-798)||(26301353-26301394)
chr8 (757-798)||(26313347-26313388)
chr8 (757-798)||(31071079-31071120)
[»] chr6 (15 HSPs)
chr6 (665-853)||(30517922-30518112)
chr6 (660-805)||(33721404-33721548)
chr6 (670-798)||(31936695-31936820)
chr6 (664-798)||(14521785-14521919)
chr6 (680-852)||(24435773-24435939)
chr6 (669-852)||(31979631-31979808)
chr6 (669-798)||(21801196-21801323)
chr6 (430-516)||(98967-99055)
chr6 (664-698)||(16569047-16569081)
chr6 (760-798)||(21356244-21356282)
chr6 (761-798)||(5572095-5572132)
chr6 (757-798)||(5757330-5757371)
chr6 (757-798)||(18233050-18233091)
chr6 (757-798)||(22963903-22963944)
chr6 (757-798)||(23824449-23824490)
[»] scaffold0016 (1 HSPs)
scaffold0016 (664-853)||(102292-102479)
[»] chr5 (19 HSPs)
chr5 (660-853)||(2630339-2630530)
chr5 (670-852)||(31300396-31300574)
chr5 (669-798)||(28832374-28832502)
chr5 (656-736)||(33030854-33030934)
chr5 (661-740)||(6741961-6742039)
chr5 (680-798)||(11181684-11181800)
chr5 (453-518)||(34842436-34842500)
chr5 (665-739)||(3651613-3651686)
chr5 (669-794)||(42127266-42127390)
chr5 (782-849)||(3325821-3325885)
chr5 (757-852)||(30900070-30900161)
chr5 (665-744)||(5611255-5611333)
chr5 (670-798)||(10281870-10281997)
chr5 (670-798)||(17003811-17003938)
chr5 (757-798)||(9353184-9353225)
chr5 (757-798)||(11916824-11916865)
chr5 (661-698)||(31182986-31183022)
chr5 (757-798)||(36932200-36932241)
chr5 (757-798)||(38219604-38219645)
[»] scaffold0140 (1 HSPs)
scaffold0140 (757-853)||(8217-8310)
[»] scaffold0148 (1 HSPs)
scaffold0148 (757-798)||(10935-10976)
[»] scaffold0098 (1 HSPs)
scaffold0098 (757-798)||(45402-45443)
[»] scaffold0087 (2 HSPs)
scaffold0087 (757-798)||(36684-36725)
scaffold0087 (757-798)||(43813-43854)
[»] scaffold0076 (2 HSPs)
scaffold0076 (660-744)||(15895-15977)
scaffold0076 (435-507)||(16190-16263)
[»] scaffold0006 (2 HSPs)
scaffold0006 (757-798)||(5889-5930)
scaffold0006 (757-798)||(133131-133172)


Alignment Details
Target: chr3 (Bit Score: 83; Significance: 7e-39; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 664 - 852
Target Start/End: Complemental strand, 5366299 - 5366110
Alignment:
Q  664 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 763  Q
    ||||||| ||| ||||| |||||||||||| ||||||  ||||| |||||| ||||||||| |||||| |||||||||||| ||         |||||||    
T  5366299 ctcacaatgaaaaaatcttaatttctacccttttttctagtcacccacactaataaatgaatcctaagcgaaaacactaaaggaaacttttcgatccttc 5366200  T
Q  764 caataat-gaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 852  Q
    |||| || ||||| | ||||||||||||||||||||||||||  || ||||||||||||||||||||||||||| |||||||||||||||    
T  5366199 caattattgaaatcttactacccaaggtgtttacaaatgttttccaactcaagaaataaactctcaccaaagactctcaaccctaaagtt 5366110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 660 - 849
Target Start/End: Original strand, 29100268 - 29100459
Alignment:
Q  660 aaaactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatc 759  Q
    ||||||||||||||||||| |||||||||||| | ||||||| |||||  ||||||||||||||| | ||||||| || |||||| ||         |||    
T  29100268 aaaactcacaaagaacaaaccctaatttctactcgtttttcaagtcacctacactcataaatgaatcataagagataatactaaaggaaacttttttatc 29100367  T
Q  760 cttccaataatgaaatttcactacccaaggtgtttac--aaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaa 849  Q
    |||| | ||||  ||| |||| |||| | ||||| ||  ||||||||| || |  |||||||||||||||||||||||||||||||||||||    
T  29100368 cttcaattaatataatctcaccacccgatgtgttcacaaaaatgtttcccaacctaagaaataaactctcaccaaagacactcaaccctaaa 29100459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 669 - 798
Target Start/End: Complemental strand, 3328326 - 3328198
Alignment:
Q  669 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 768  Q
    ||||||||| |||||||||||||||||||||||  |||| ||||||| | |||| | ||||||||||||||| ||| ||         |||||||||||     
T  3328326 aaagaacaagtcctaatttctacccatttttcatatcacccacactc-tcaatgtatcctaagagaaaacacaaaaggaagttttttgatccttccaatg 3328228  T
Q  769 atgaaatttcactacccaaggtgtttacaa 798  Q
     |||||| ||||||||||||||||||||||    
T  3328227 ctgaaatctcactacccaaggtgtttacaa 3328198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 664 - 744
Target Start/End: Original strand, 21353674 - 21353753
Alignment:
Q  664 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaa 744  Q
    ||||||||||||| | |||||||||||||||||||||| | |||||||||| |  |||||| | |||||||||||||||||    
T  21353674 ctcacaaagaacacaacctaatttctacccatttttcatgccactcacactta-caatgaatcttaagagaaaacactaaa 21353753  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 757 - 856
Target Start/End: Complemental strand, 33386557 - 33386461
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttctct 856  Q
    |||||||||||  |||||| |||||||||||||||||||| ||||||||||| | ||||| ||   ||| |  |||||||||||||||||||||||||||    
T  33386557 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttctcaacccaagagat--cctcactacaaagacactcaaccctaaagttctct 33386461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 669 - 852
Target Start/End: Complemental strand, 1417460 - 1417281
Alignment:
Q  669 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 768  Q
    ||||||||| |||||||||||||||||||||||  |||| |||||||   |||||| ||||||||||||||| |||  |         |||||| ||||     
T  1417460 aaagaacaagtcctaatttctacccatttttcatatcacccacactc-ccaatgaatcctaagagaaaacacaaaagaaaactttttgatcctttcaatg 1417362  T
Q  769 atgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 852  Q
     |||||| |||||||| || |||||||| |||||||| || | ||||  |||| ||| |  |||||||||||||||||||||||    
T  1417361 gtgaaatctcactacctaaagtgtttac-aatgtttcccaacccaag--ataacctcactacaaagacactcaaccctaaagtt 1417281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 656 - 715
Target Start/End: Complemental strand, 4386911 - 4386851
Alignment:
Q  656 gcttaaaa-ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactc 715  Q
    |||||||| ||||||||||||||| |||||||||||| ||||||||| ||||| |||||||    
T  4386911 gcttaaaagctcacaaagaacaaaacctaatttctactcatttttcaagtcacccacactc 4386851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 669 - 798
Target Start/End: Original strand, 8126748 - 8126875
Alignment:
Q  669 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 768  Q
    |||||||||  | ||||||||||||||||||   ||||| ||||||| | |||||| | ||||||||||||| ||| ||         |||||||||||     
T  8126748 aaagaacaatacttaatttctacccatttttgt-gtcacccacactc-tcaatgaatcttaagagaaaacacaaaaagaagctttttgatccttccaatg 8126845  T
Q  769 atgaaatttcactacccaaggtgtttacaa 798  Q
    ||||||| ||||||||||||||||||||||    
T  8126846 atgaaatctcactacccaaggtgtttacaa 8126875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 670 - 798
Target Start/End: Complemental strand, 18552851 - 18552726
Alignment:
Q  670 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 769  Q
    ||||||||  |||||||||||||||||||    ||||| ||||||| | |||||| ||||||||||||||| ||| ||         |||||||||||      
T  18552851 aagaacaagacctaatttctacccattttgt--gtcacccacactc-tcaatgaatcctaagagaaaacacaaaaggaagttttttgatccttccaatgg 18552755  T
Q  770 tgaaatttcactacccaaggtgtttacaa 798  Q
    |||||| ||||||||||||||||||||||    
T  18552754 tgaaatctcactacccaaggtgtttacaa 18552726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 670 - 852
Target Start/End: Complemental strand, 40592750 - 40592572
Alignment:
Q  670 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataa-atgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 768  Q
    |||||||||  ||||||||||||||||||    ||||| ||| |||| || ||||| ||||||||||||||| ||| ||         |||||||||||     
T  40592750 aagaacaaaatctaatttctacccattttgt--gtcacccactctcacaatatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatg 40592653  T
Q  769 atgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 852  Q
     |||||| |||||||||||||||||||| |||||||| || | ||||| ||   ||| |  |||||||||||||||||||||||    
T  40592652 gtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaagagat--cctcactacaaagacactcaaccctaaagtt 40592572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 656 - 716
Target Start/End: Original strand, 25517085 - 25517146
Alignment:
Q  656 gcttaaaa-ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactca 716  Q
    |||||||| ||||||||||||||| ||||||||||||  |||||||| ||||| ||||||||    
T  25517085 gcttaaaagctcacaaagaacaaaccctaatttctacttatttttcaagtcacccacactca 25517146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 820 - 853
Target Start/End: Original strand, 25517446 - 25517479
Alignment:
Q  820 aaactctcaccaaagacactcaaccctaaagttc 853  Q
    ||||||||||||||||||||||||||||||||||    
T  25517446 aaactctcaccaaagacactcaaccctaaagttc 25517479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 757 - 853
Target Start/End: Complemental strand, 27986338 - 27986245
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttc 853  Q
    |||||||||||  |||||| |||||||||||||||||||| |||||||| || | ||||| ||   ||| |  ||||||||||||||||||||||||    
T  27986338 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaagagat--cctcactacaaagacactcaaccctaaagttc 27986245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 665 - 744
Target Start/End: Original strand, 21156542 - 21156620
Alignment:
Q  665 tcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaa 744  Q
    ||||||||||||||  || ||||||| |||||||| | ||||   ||||||||||||||  |||||||||||||||||||    
T  21156542 tcacaaagaacaaaatcttatttctatccatttttaa-gtcataaacactcataaatgattcctaagagaaaacactaaa 21156620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 664 - 698
Target Start/End: Original strand, 29196507 - 29196541
Alignment:
Q  664 ctcacaaagaacaaatcctaatttctacccatttt 698  Q
    ||||||||||||||| |||||||||||||||||||    
T  29196507 ctcacaaagaacaaaccctaatttctacccatttt 29196541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 671 - 798
Target Start/End: Original strand, 35925599 - 35925723
Alignment:
Q  671 agaacaaatcctaatttctacccatttttcacgtcactcacactcataa-atgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 769  Q
    |||||||| |||||||||||||||||| |   ||||| ||| |||| || ||||| ||||||||||||||| ||| ||         |||||||||||      
T  35925599 agaacaaaacctaatttctacccatttgt---gtcacccactctcacaatatgaatcctaagagaaaacacaaaaggaagcttttg-atccttccaatgg 35925694  T
Q  770 tgaaatttcactacccaaggtgtttacaa 798  Q
    |||||| ||||||||||||||||||||||    
T  35925695 tgaaatctcactacccaaggtgtttacaa 35925723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 670 - 798
Target Start/End: Original strand, 36029212 - 36029338
Alignment:
Q  670 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataa-atgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 768  Q
    ||||||||  |||||||||||||||||||    ||||||||| |||| || ||||| ||||||||||||||| ||| ||         |||||||||||     
T  36029212 aagaacaagacctaatttctacccattttgt--gtcactcactctcaaaatatgaatcctaagagaaaacacaaaaggaagcttttg-atccttccaatg 36029308  T
Q  769 atgaaatttcactacccaaggtgtttacaa 798  Q
     |||||| ||||||||||||||||||||||    
T  36029309 gtgaaatctcactacccaaggtgtttacaa 36029338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 669 - 711
Target Start/End: Original strand, 37466408 - 37466450
Alignment:
Q  669 aaagaacaaatcctaatttctacccatttttcacgtcactcac 711  Q
    ||||||||| |||||||||||||||||||||||  ||||||||    
T  37466408 aaagaacaagtcctaatttctacccatttttcatatcactcac 37466450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Original strand, 1306154 - 1306195
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  1306154 atccttccaatggtgaaatctcactacccaaggtgtttacaa 1306195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Complemental strand, 1736186 - 1736145
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  1736186 atccttccaatggtgaaatctcactacccaaggtgtttacaa 1736145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Complemental strand, 3715884 - 3715843
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  3715884 atccttccaatggtgaaatctcactacccaaggtgtttacaa 3715843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Original strand, 16264553 - 16264594
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  16264553 atccttccaatggtgaaatctcactacccaaggtgtttacaa 16264594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Original strand, 27453164 - 27453205
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  27453164 atccttccaatggtgaaatctcactacccaaggtgtttacaa 27453205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Complemental strand, 27974834 - 27974793
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  27974834 atccttccaatggtgaaatctcactacccaaggtgtttacaa 27974793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Original strand, 32143527 - 32143568
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  32143527 atccttccaatggtgaaatctcactacccaaggtgtttacaa 32143568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Complemental strand, 39032436 - 39032395
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  39032436 atccttccaatggtgaaatctcactacccaaggtgtttacaa 39032395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Complemental strand, 47923786 - 47923745
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  47923786 atccttccaatggtgaaatctcactacccaaggtgtttacaa 47923745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 2e-36; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 664 - 853
Target Start/End: Complemental strand, 34670650 - 34670463
Alignment:
Q  664 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 763  Q
    ||||||||||||||||| ||||||||| |||||||||| ||||||||||||||  |||||| |||||||||||||||||||  |         |||||||    
T  34670650 ctcacaaagaacaaatcataatttctatccatttttcaagtcactcacactca-caatgaatcctaagagaaaacactaaagaaaacttttagatccttc 34670552  T
Q  764 caataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttc 853  Q
    |  |||||| || |||||||||||| || |||||||||||||||| ||||||||| |||||||||| ||| |||||| ||||||||||||    
T  34670551 ctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaagaaa-aaactctcactaaatacactctaccctaaagttc 34670463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 660 - 804
Target Start/End: Original strand, 37781970 - 37782114
Alignment:
Q  660 aaaactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatc 759  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||  |||||| |||||||| | ||||||||||||||||| ||         ||     
T  37781970 aaaactcacaaagaacaaatcttaatttctacccatttttcaagtcacctacactcgtaaatgaatcttaagagaaaacactaaaagagactttttgatt 37782069  T
Q  760 cttccaataatgaaatttcactacccaaggtgtttacaaatgttt 804  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  37782070 cttccaataatgaaatctcactacccaaggtgtttacaaatgttt 37782114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 767 - 853
Target Start/End: Complemental strand, 873401 - 873316
Alignment:
Q  767 taatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttc 853  Q
    |||||| || ||||||| ||||||||||||||||||| | || | ||||||| ||| | ||||||||||||||||||||||||||||    
T  873401 taatgagatctcactactcaaggtgtttacaaatgttccccaacccaagaaa-aaattatcaccaaagacactcaaccctaaagttc 873316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 680 - 798
Target Start/End: Original strand, 5112365 - 5112482
Alignment:
Q  680 cctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataatgaaatttca 779  Q
    |||||||| |||| |||||| | |||||||||||||| || |||| ||||||||||||||  ||| ||         |||||||||||  |||||| |||    
T  5112365 cctaatttgtacctattttttaagtcactcacactcacaa-tgaatcctaagagaaaacataaaaggaagctttttgatccttccaatggtgaaatctca 5112463  T
Q  780 ctacccaaggtgtttacaa 798  Q
    |||||||||||||||||||    
T  5112464 ctacccaaggtgtttacaa 5112482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 435 - 510
Target Start/End: Complemental strand, 873807 - 873731
Alignment:
Q  435 ttgtgaattcaaacaaataatcaaaccaataaa-cttagatgtgtagagtaaagtaagtagtaatcaaagagtaaag 510  Q
    ||||||||| ||||||||||| | ||||||||| ||||||||| |||||||| | |||| |||||||| ||| ||||    
T  873807 ttgtgaatttaaacaaataattacaccaataaaacttagatgtatagagtaatggaagttgtaatcaatgagcaaag 873731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 757 - 852
Target Start/End: Complemental strand, 16623186 - 16623094
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 852  Q
    |||||||||||  |||||| |||||||||||||||||||| |||||||| || | ||||| ||   ||| |  |||||||||||||||||||||||    
T  16623186 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaagagat--cctcactacaaagacactcaaccctaaagtt 16623094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 757 - 852
Target Start/End: Complemental strand, 16628765 - 16628673
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 852  Q
    |||||||||||  |||||| |||||||||||||||||||| |||||||| || | ||||| ||   ||| |  |||||||||||||||||||||||    
T  16628765 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaagagat--cctcactacaaagacactcaaccctaaagtt 16628673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 661 - 737
Target Start/End: Complemental strand, 18912351 - 18912276
Alignment:
Q  661 aaactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaa 737  Q
    |||||||||||||||||| ||||| || || |||||||||| |||||||| || ||  |||||| ||||||||||||    
T  18912351 aaactcacaaagaacaaaccctaaattatatccatttttcaagtcactcaaaccca-caatgaatcctaagagaaaa 18912276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Original strand, 10047585 - 10047626
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  10047585 atccttccaatggtgaaatctcactacccaaggtgtttacaa 10047626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Original strand, 24334015 - 24334056
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  24334015 atccttccaatggtgaaatctcactacccaaggtgtttacaa 24334056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Complemental strand, 28468429 - 28468388
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  28468429 atccttccaatggtgaaatctcactacccaaggtgtttacaa 28468388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Complemental strand, 31985526 - 31985485
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||| ||  |||||||||||||||||||||||||||||    
T  31985526 atccttcccatggtgaaatttcactacccaaggtgtttacaa 31985485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 3e-32; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 664 - 838
Target Start/End: Complemental strand, 18674386 - 18674213
Alignment:
Q  664 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 763  Q
    ||||||||||||||| | ||||||||| |||||||||| ||||| |||||||||||||||| | |||||||||||| |||| ||         ||||||     
T  18674386 ctcacaaagaacaaaccataatttctatccatttttcaagtcacccacactcataaatgaatcataagagaaaacattaaaggaagctttttgatcctt- 18674288  T
Q  764 caataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacac 838  Q
    |||||||||||| ||||| | |||||||||||| |||||||| || | |||||| ||||||||||||||||||||    
T  18674287 caataatgaaatctcactgctcaaggtgtttacgaatgtttcccaacccaagaattaaactctcaccaaagacac 18674213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 656 - 853
Target Start/End: Complemental strand, 28770768 - 28770572
Alignment:
Q  656 gcttaaaa-ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnn 754  Q
    |||||||| |||||||||||||||  ||||||||||||||||||||| ||||  |||||||  || |||| ||||||||||||||||||| ||           
T  28770768 gcttaaaagctcacaaagaacaaactctaatttctacccatttttcaagtcatacacactcgcaa-tgaatcctaagagaaaacactaaaggaaactttt 28770670  T
Q  755 nnatccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttc 853  Q
      |||||||   |||||| || ||||||||||||||||||||||||||||  || |  |||||| |||| |||||||||||||||||||||||||||||    
T  28770669 ttatccttcagctaatgagatctcactacccaaggtgtttacaaatgttttccaaccaaagaaa-aaacactcaccaaagacactcaaccctaaagttc 28770572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 762 - 852
Target Start/End: Original strand, 12632890 - 12632980
Alignment:
Q  762 tccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 852  Q
    ||||||||| |||| |||  ||||||||||||||||||||||||||| | ||| |||||||||||||  ||||||||||||||||||||||    
T  12632890 tccaataataaaatctcatcacccaaggtgtttacaaatgtttctcaacccaataaataaactctcattaaagacactcaaccctaaagtt 12632980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 435 - 518
Target Start/End: Original strand, 16388261 - 16388344
Alignment:
Q  435 ttgtgaattcaaacaaataatcaaaccaataaacttagatgtgtagagtaaagtaagtagtaatcaaagagtaaagtagtctca 518  Q
    |||||||||| |||||||||||| ||| |||||||||||||||| ||| |||| ||||||||||||| || |||||||||||||    
T  16388261 ttgtgaattcgaacaaataatcacaccgataaacttagatgtgtggagcaaagaaagtagtaatcaatgaataaagtagtctca 16388344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 435 - 518
Target Start/End: Complemental strand, 16388757 - 16388674
Alignment:
Q  435 ttgtgaattcaaacaaataatcaaaccaataaacttagatgtgtagagtaaagtaagtagtaatcaaagagtaaagtagtctca 518  Q
    ||||||||||||||||||||||| | |||||||||||||||||| ||| |||   |||||||||||| ||||||||||||||||    
T  16388757 ttgtgaattcaaacaaataatcacatcaataaacttagatgtgtggagcaaaaatagtagtaatcaatgagtaaagtagtctca 16388674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 656 - 743
Target Start/End: Complemental strand, 2869687 - 2869599
Alignment:
Q  656 gcttaaaa-ctcacaaagaacaaat-cctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaa 743  Q
    |||||||| |||||||||||||||  |||||||||||||||||||||| ||||| ||||||| | |||||| ||||||||||||||||||    
T  2869687 gcttaaaagctcacaaagaacaaaaacctaatttctacccatttttcaagtcacccacactc-tcaatgaatcctaagagaaaacactaa 2869599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 670 - 852
Target Start/End: Original strand, 3278118 - 3278297
Alignment:
Q  670 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 769  Q
    |||||||||| |  |||||| | |||||||||  ||||||||||||| || |||||||||||||||||| ||||| ||         |||| ||| ||||    
T  3278118 aagaacaaattccgatttcttctcatttttcaattcactcacactcacaa-tgaaccctaagagaaaacgctaaaggaagttttttgatccgtcctataa 3278216  T
Q  770 tgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 852  Q
    |||||| |||||| |||||||||||||||||||||  || | ||||  | || |||||| ||| || ||||||||||||||||    
T  3278217 tgaaatctcactatccaaggtgtttacaaatgttttccaacccaag--agaatctctcatcaacgatactcaaccctaaagtt 3278297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 664 - 740
Target Start/End: Complemental strand, 15903875 - 15903800
Alignment:
Q  664 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacac 740  Q
    |||||||||||||||| ||||||||||||||||||||| ||||| ||||||| | |||||| |||| ||||||||||    
T  15903875 ctcacaaagaacaaattctaatttctacccatttttcaagtcacccacactc-tcaatgaatcctatgagaaaacac 15903800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 670 - 798
Target Start/End: Complemental strand, 14698986 - 14698861
Alignment:
Q  670 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 769  Q
    ||||||||  |||||||||||||||||||    ||||| ||||||| | |||||| ||||||||||||||| ||| ||         ||||||||||||     
T  14698986 aagaacaagacctaatttctacccattttgt--gtcacccacactc-tcaatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatag 14698890  T
Q  770 tgaaatttcactacccaaggtgtttacaa 798  Q
    |||||| ||||||||||||||||||||||    
T  14698889 tgaaatctcactacccaaggtgtttacaa 14698861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 772 - 852
Target Start/End: Complemental strand, 41586429 - 41586351
Alignment:
Q  772 aaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 852  Q
    |||| |||||||||||||||||||||| |||||  || | ||||| |  | ||||||||||||||||||||||||||||||    
T  41586429 aaatctcactacccaaggtgtttacaactgttttccaacccaagaga--agctctcaccaaagacactcaaccctaaagtt 41586351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 664 - 798
Target Start/End: Complemental strand, 2838015 - 2837881
Alignment:
Q  664 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 763  Q
    ||||||||||||| | |||||||| | ||||||||||| ||||| ||| ||  | |||||| ||||||||||||||||||| ||         |||||||    
T  2838015 ctcacaaagaacacaacctaatttttgcccatttttcatgtcacccac-cttctcaatgaatcctaagagaaaacactaaaggaatattttttatccttc 2837917  T
Q  764 caataatgaaatt-tcactacccaaggtgtttacaa 798  Q
    ||||  ||||||| |||||| |||||||||||||||    
T  2837916 caatggtgaaattctcactatccaaggtgtttacaa 2837881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 757 - 798
Target Start/End: Complemental strand, 23078364 - 23078323
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    ||||||||||| ||||||| ||||||||||||||||||||||    
T  23078364 atccttccaatgatgaaatctcactacccaaggtgtttacaa 23078323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 757 - 852
Target Start/End: Complemental strand, 36757655 - 36757563
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 852  Q
    |||||||||||  |||||| |||||||||||||||||||| |||||||| || | ||||| ||   ||| |  |||||||||||||||||||||||    
T  36757655 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaagagat--cctcactacaaagacactcaaccctaaagtt 36757563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 670 - 798
Target Start/End: Original strand, 34388969 - 34389096
Alignment:
Q  670 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataa-atgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 768  Q
    ||||||||  |||||||||||||||||||    ||||| ||| |||| || ||||| ||||||||||||||| ||| ||         |||||||||||     
T  34388969 aagaacaagacctaatttctacccattttgt--gtcacccactctcacaatatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatg 34389066  T
Q  769 atgaaatttcactacccaaggtgtttacaa 798  Q
     |||||| ||||||||||||||||||||||    
T  34389067 gtgaaatctcactacccaaggtgtttacaa 34389096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Original strand, 8040268 - 8040309
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  8040268 atccttccaatggtgaaatctcactacccaaggtgtttacaa 8040309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Complemental strand, 10445360 - 10445319
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  10445360 atccttccaatggtgaaatctcactacccaaggtgtttacaa 10445319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Original strand, 21630149 - 21630190
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  21630149 atccttccaatggtgaaatctcactacccaaggtgtttacaa 21630190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 65; Significance: 4e-28; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 656 - 850
Target Start/End: Original strand, 14785 - 14979
Alignment:
Q  656 gcttaaaa-ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaa-tgaaccctaagagaaaacactaaatgannnnnn 753  Q
    |||||||| |||||||||||| || |||| || ||||| |||||||| ||||| |||||||| ||| |||| ||||||||||||||||||| ||          
T  14785 gcttaaaagctcacaaagaactaaccctagttcctacctatttttcaagtcacccacactcacaaagtgaatcctaagagaaaacactaaaggagttttt 14884  T
Q  754 nnnatccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaag 850  Q
       || ||||||||||| |||| |||| ||| ||||| |||||||||||||| || | ||| |||||||||||||||||||||| ||||||||||||    
T  14885 g--atgcttccaataataaaatctcaccaccaaaggtatttacaaatgtttcccaacccaaaaaataaactctcaccaaagacattcaaccctaaag 14979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 4e-28; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 660 - 853
Target Start/End: Complemental strand, 25116690 - 25116498
Alignment:
Q  660 aaaactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatc 759  Q
    ||||||||||||||| ||  |||||||| |||||  |||||| ||||  ||||||||||||| || | |||||||||||||||||  |         |||    
T  25116690 aaaactcacaaagaagaacccctaatttttaccc--ttttcaagtcatccacactcataaataaatcttaagagaaaacactaaagaaatttttttaatc 25116593  T
Q  760 cttccaataatgaaatttcactaccc-aaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttc 853  Q
    |||| ||||||||||| ||||||||| || ||||||||||||||||| || | ||| |||||||||||||| ||||||||||||| |||||||||    
T  25116592 cttcaaataatgaaatctcactaccctaatgtgtttacaaatgtttcccaacccaataaataaactctcacaaaagacactcaactctaaagttc 25116498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 664 - 856
Target Start/End: Original strand, 8281430 - 8281620
Alignment:
Q  664 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 763  Q
    |||||||||||||||| |||||||||| | ||| || | ||||| | |||||| || |||| || |||||||||||||||| ||         || ||||    
T  8281430 ctcacaaagaacaaattctaatttctatcaattatttaagtcacccgcactcacaa-tgaatccaaagagaaaacactaaaggaagtttttttattcttc 8281528  T
Q  764 caataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttctct 856  Q
    |  |||||| || ||||||||||||||||||||||||| ||| || | ||||||| ||||||||| ||||||  | |||||||||||||||||    
T  8281529 ctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaagaaa-aaactctcatcaaagatgcccaaccctaaagttctct 8281620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 669 - 852
Target Start/End: Complemental strand, 47098804 - 47098626
Alignment:
Q  669 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 768  Q
    ||||||||| |||||||||||||||| ||||||| |||| ||||||| | |||||| ||||||| ||||||| ||| ||         |||||||||||     
T  47098804 aaagaacaagtcctaatttctaccca-ttttcacatcacccacactc-tcaatgaaacctaagaaaaaacacaaaaggaagctttttgatccttccaatg 47098707  T
Q  769 atgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 852  Q
     |||||| |||||||||||||||||||| |||||||| || | ||||  | || ||| |  |||||||||||||||||||||||    
T  47098706 gtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaag--agaacctcgctacaaagacactcaaccctaaagtt 47098626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 435 - 518
Target Start/End: Original strand, 8281135 - 8281219
Alignment:
Q  435 ttgtgaattcaaacaaataatcaaaccaata-aacttagatgtgtagagtaaagtaagtagtaatcaaagagtaaagtagtctca 518  Q
    |||||||||||||| |||||| | ||||||| |||||||||||||||| ||||| || |||||||||| || |||||||||||||    
T  8281135 ttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaaatagtaatcaatgaataaagtagtctca 8281219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 669 - 852
Target Start/End: Complemental strand, 47102821 - 47102640
Alignment:
Q  669 aaagaacaaatcctaatttcta--cccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaa 766  Q
    ||||||||| ||||||||||||  |||||||||||  |||||||||||| | |||||| ||||||| ||||||| |||  |         ||||||||||    
T  47102821 aaagaacaagtcctaatttctatacccatttttcatatcactcacactc-tcaatgaatcctaagaaaaaacacaaaagaaagctttttgatccttccaa 47102723  T
Q  767 taatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 852  Q
    | ||||||| |||||||||||||||||||| |||||||| || | ||||  | || ||| |  |||||||||||||||||||||||    
T  47102722 tgatgaaatctcactacccaaggtgtttac-aatgtttcccaacccaag--agaacctcactacaaagacactcaaccctaaagtt 47102640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 669 - 798
Target Start/End: Original strand, 19073046 - 19073173
Alignment:
Q  669 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 768  Q
    |||||||||  |||||||||||||||||||    |||||||||||||  ||||||||||||||||||||||| ||| ||         |||||||||||     
T  19073046 aaagaacaatacctaatttctacccattttgt--gtcactcacactctcaaatgaaccctaagagaaaacacaaaaggaagctttttgatccttccaatg 19073143  T
Q  769 atgaaatttcactacccaaggtgtttacaa 798  Q
     |||||| |||||| |||||||||||||||    
T  19073144 gtgaaatctcactatccaaggtgtttacaa 19073173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 669 - 798
Target Start/End: Original strand, 19120936 - 19121063
Alignment:
Q  669 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 768  Q
    |||||||||  |||||||||||||||||||    |||||||||||||  ||||||||||||||||||||||| ||| ||         |||||||||||     
T  19120936 aaagaacaatacctaatttctacccattttgt--gtcactcacactctcaaatgaaccctaagagaaaacacaaaaggaagctttttgatccttccaatg 19121033  T
Q  769 atgaaatttcactacccaaggtgtttacaa 798  Q
     |||||| |||||| |||||||||||||||    
T  19121034 gtgaaatctcactatccaaggtgtttacaa 19121063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 435 - 518
Target Start/End: Original strand, 10996772 - 10996856
Alignment:
Q  435 ttgtgaattcaaacaaataatcaaaccaataaa-cttagatgtgtagagtaaagtaagtagtaatcaaagagtaaagtagtctca 518  Q
    |||||||||| |||||| ||||| ||||||||| |||| || |||||||||||| ||||||||||||| || |||||||| ||||    
T  10996772 ttgtgaattcgaacaaacaatcacaccaataaaacttacatatgtagagtaaagaaagtagtaatcaatgaataaagtagcctca 10996856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 670 - 852
Target Start/End: Original strand, 32889558 - 32889734
Alignment:
Q  670 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 769  Q
    |||||||| |||||||||||||||||||||||  |||| ||||||| | |||||| ||||||||||||||| ||| ||         | |||||||||      
T  32889558 aagaacaagtcctaatttctacccatttttcatatcacccacactc-tcaatgaatcctaagagaaaacac-aaaagaagcttttgaa-ccttccaatgg 32889654  T
Q  770 tgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 852  Q
    |||||| |||||||||||||||||||| |||||||| || | ||  ||| || ||| |  |||||||||||||||||||||||    
T  32889655 tgaaatctcactacccaaggtgtttac-aatgtttcccaaccca--aaaaaacctcactacaaagacactcaaccctaaagtt 32889734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 666 - 740
Target Start/End: Complemental strand, 17345502 - 17345429
Alignment:
Q  666 cacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacac 740  Q
    ||||||||||||| |||||||||||||||||||| | ||||| ||||||| | |||||| | |||||||||||||    
T  17345502 cacaaagaacaaaacctaatttctacccattttttaagtcacccacactc-ttaatgaatcttaagagaaaacac 17345429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 656 - 744
Target Start/End: Complemental strand, 35109531 - 35109443
Alignment:
Q  656 gcttaaaa-ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaa 744  Q
    |||||||| ||||||||||||||| | ||||||||||||| |||||| ||||| ||||||||  |||||| |||| ||||||| ||||||    
T  35109531 gcttaaaagctcacaaagaacaaaccttaatttctacccaattttcaagtcacacacactca-caatgaatcctacgagaaaatactaaa 35109443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 669 - 744
Target Start/End: Complemental strand, 32736976 - 32736902
Alignment:
Q  669 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaa 744  Q
    |||||||||| |||||||||||||||||||||| ||||   |||||||  |||||| ||||||||||||| |||||    
T  32736976 aaagaacaaaccctaatttctacccatttttcaagtcatcgacactca-caatgaatcctaagagaaaaccctaaa 32736902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 437 - 501
Target Start/End: Complemental strand, 35109811 - 35109745
Alignment:
Q  437 gtgaattcaaacaaa-taatcaaaccaataaa-cttagatgtgtagagtaaagtaagtagtaatcaa 501  Q
    |||||||| |||||| |||||| ||||||||| ||||||||||||||| |||| |||||||||||||    
T  35109811 gtgaattcgaacaaaataatcacaccaataaaacttagatgtgtagaggaaaggaagtagtaatcaa 35109745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 660 - 701
Target Start/End: Complemental strand, 11032309 - 11032268
Alignment:
Q  660 aaaactcacaaagaacaaatcctaatttctacccatttttca 701  Q
    ||||||||||||||||||| | ||||||||||||||||||||    
T  11032309 aaaactcacaaagaacaaaacataatttctacccatttttca 11032268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 661 - 701
Target Start/End: Complemental strand, 918468 - 918428
Alignment:
Q  661 aaactcacaaagaacaaatcctaatttctacccatttttca 701  Q
    |||||||||||||||||| | ||||||||||||||||||||    
T  918468 aaactcacaaagaacaaaccataatttctacccatttttca 918428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 669 - 798
Target Start/End: Complemental strand, 40816793 - 40816668
Alignment:
Q  669 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 768  Q
    |||||||||  |||||||||||| ||||| |   ||||| ||||||| | |||||| ||||||||||||||| ||| ||         |||||||||||     
T  40816793 aaagaacaagacctaatttctactcatttgt---gtcacccacactc-tcaatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatg 40816698  T
Q  769 atgaaatttcactacccaaggtgtttacaa 798  Q
     |||||| ||||||||||||||||||||||    
T  40816697 gtgaaatctcactacccaaggtgtttacaa 40816668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 661 - 744
Target Start/End: Original strand, 3019839 - 3019921
Alignment:
Q  661 aaactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaa 744  Q
    ||||||||||||||||  | |||||||||||| |||||||| |||||||| || || ||||||| ||| | |||||||| ||||    
T  3019839 aaactcacaaagaacattttctaatttctaccaatttttcaagtcactcaaaccca-aaatgaatcctgatagaaaacaataaa 3019921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 690 - 805
Target Start/End: Complemental strand, 11031433 - 11031320
Alignment:
Q  690 acccatttttcacgtcactcacactcataaatgaaccctaagagaaaa-cactaaatgannnnnnnnnatccttccaataatgaaatttcactacccaag 788  Q
    |||||||||||| |||| ||||||||| || || | |||||||||||| ||||||| ||         ||||||||||||||||| |  ||||||||| |    
T  11031433 acccatttttcaagtcattcacactcacaa-tgtatcctaagagaaaaacactaaaggaagctttttgatccttccaataatgaact--cactacccacg 11031337  T
Q  789 gtgtttacaaatgtttc 805  Q
    |||||||||||||||||    
T  11031336 gtgtttacaaatgtttc 11031320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 664 - 798
Target Start/End: Original strand, 22819541 - 22819676
Alignment:
Q  664 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagag--aaaacactaaatgannnnnnnnnatcct 761  Q
    ||||||||||| ||  | ||||||||| |||||||||| ||||| ||||||| | |||||| ||||||||  ||||||| ||| ||         |||||    
T  22819541 ctcacaaagaataagacataatttctaaccatttttcaagtcacccacactc-tcaatgaatcctaagagaaaaaacacaaaaggaagctttttgatcct 22819639  T
Q  762 tccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    ||||||  |||||| | ||||||||||||||||||||    
T  22819640 tccaatggtgaaatgtaactacccaaggtgtttacaa 22819676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Original strand, 3281911 - 3281952
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  3281911 atccttccaatggtgaaatctcactacccaaggtgtttacaa 3281952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 667 - 716
Target Start/End: Original strand, 10997071 - 10997120
Alignment:
Q  667 acaaagaacaaatcctaatttctacccatttttcacgtcactcacactca 716  Q
    ||||| |||||| |||||||||||||||||||||| ||||| | ||||||    
T  10997071 acaaataacaaaccctaatttctacccatttttcaagtcaccctcactca 10997120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 767 - 853
Target Start/End: Original strand, 10997173 - 10997263
Alignment:
Q  767 taatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaat----aaactctcaccaaagacactcaaccctaaagttc 853  Q
    |||||| ||||||||| |||||||||||| ||||||||| || |  |||||||    |||||||||||| | ||||||| || ||||||||    
T  10997173 taatgacatttcactatccaaggtgtttaaaaatgtttcccaacctaagaaattaagaaactctcaccacatacactcagccttaaagttc 10997263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Original strand, 13598604 - 13598645
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  13598604 atccttccaatggtgaaatctcactacccaaggtgtttacaa 13598645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Complemental strand, 13604515 - 13604474
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  13604515 atccttccaatggtgaaatctcactacccaaggtgtttacaa 13604474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Complemental strand, 16124407 - 16124366
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  16124407 atccttccaatggtgaaatctcactacccaaggtgtttacaa 16124366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Complemental strand, 19358734 - 19358693
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  19358734 atccttccaatggtgaaatctcactacccaaggtgtttacaa 19358693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Complemental strand, 19361323 - 19361282
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  19361323 atccttccaatggtgaaatctcactacccaaggtgtttacaa 19361282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Complemental strand, 19366199 - 19366158
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  19366199 atccttccaatggtgaaatctcactacccaaggtgtttacaa 19366158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Complemental strand, 19379963 - 19379922
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  19379963 atccttccaatggtgaaatctcactacccaaggtgtttacaa 19379922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Original strand, 29652017 - 29652058
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  29652017 atccttccaatggtgaaatctcactacccaaggtgtttacaa 29652058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 6e-24; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 669 - 852
Target Start/End: Complemental strand, 23402993 - 23402814
Alignment:
Q  669 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 768  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||| ||| ||         ||| |||||||     
T  23402993 aaagaacaagtcctaatttctacccatttttcacatcactcacactc-tcaatgaatcctaagagaaaacacaaaaggaagctttttgatcattccaatg 23402895  T
Q  769 atgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 852  Q
     |||||| |||||||||||||||||||| |||||||| || | ||||  | || ||| |  |||||||||||||||||||||||    
T  23402894 gtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaag--agaacctcactacaaagacactcaaccctaaagtt 23402814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 669 - 852
Target Start/End: Original strand, 20284206 - 20284385
Alignment:
Q  669 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 768  Q
    ||||||||| ||||||||||||||| |||||||  |||| ||||||| | |||||| ||||||||||||||| ||| ||         |||||||||||     
T  20284206 aaagaacaagtcctaatttctacccttttttcatatcacccacactc-tcaatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatg 20284304  T
Q  769 atgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 852  Q
     |||||| |||||||||||||||||||| |||||||| || | ||||  | || ||| |  |||||||||||||||||||||||    
T  20284305 gtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaag--agaacctcactacaaagacactcaaccctaaagtt 20284385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 664 - 798
Target Start/End: Complemental strand, 5817255 - 5817122
Alignment:
Q  664 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 763  Q
    ||||||||||||||| ||||||||||| |||||||||| ||||||||||||| | |||||| ||||||| ||||||| ||| ||         |||||||    
T  5817255 ctcacaaagaacaaaacctaatttctatccatttttcaagtcactcacactc-tcaatgaatcctaagaaaaaacacaaaaggaagctttttgatccttc 5817157  T
Q  764 caataatgaaatttcactacccaaggtgtttacaa 798  Q
    ||||  |||||| ||||| |||||||| |||||||    
T  5817156 caatggtgaaatctcactccccaaggtatttacaa 5817122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 670 - 798
Target Start/End: Complemental strand, 9185153 - 9185026
Alignment:
Q  670 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 769  Q
    |||||||| |||||||||||||||||||||||  |||| ||||||| | |||||| |||||||||||||||  || ||         |||||||||||      
T  9185153 aagaacaagtcctaatttctacccatttttcatatcacccacactc-ttaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatgg 9185055  T
Q  770 tgaaatttcactacccaaggtgtttacaa 798  Q
    |||||| ||||||||||||||||||||||    
T  9185054 tgaaatctcactacccaaggtgtttacaa 9185026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 670 - 798
Target Start/End: Complemental strand, 9189986 - 9189859
Alignment:
Q  670 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 769  Q
    |||||||| |||||||||||||||||||||||  |||| ||||||| | |||||| |||||||||||||||  || ||         |||||||||||      
T  9189986 aagaacaagtcctaatttctacccatttttcatatcacccacactc-ttaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatgg 9189888  T
Q  770 tgaaatttcactacccaaggtgtttacaa 798  Q
    |||||| ||||||||||||||||||||||    
T  9189887 tgaaatctcactacccaaggtgtttacaa 9189859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 670 - 798
Target Start/End: Original strand, 2580508 - 2580635
Alignment:
Q  670 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 769  Q
    |||||||| ||||| |||||||||||||||||  |||| ||||||| | |||||| ||||||||||||||| ||| ||         |||||| ||||      
T  2580508 aagaacaagtcctagtttctacccatttttcatatcacccacactc-tcaatgaatcctaagagaaaacacaaaaggaagctttttgatcctttcaatgg 2580606  T
Q  770 tgaaatttcactacccaaggtgtttacaa 798  Q
    |||||| ||||||||||||||||||||||    
T  2580607 tgaaatctcactacccaaggtgtttacaa 2580635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 786 - 856
Target Start/End: Original strand, 27984678 - 27984747
Alignment:
Q  786 aaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttctct 856  Q
    ||||| ||||||||| ||||||||| ||||||| ||||||||||||||||||| ||  |||||||||||||    
T  27984678 aaggtttttacaaatatttctcatcccaagaaa-aaactctcaccaaagacacccagtcctaaagttctct 27984747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 757 - 852
Target Start/End: Complemental strand, 46516198 - 46516106
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 852  Q
    |||||||||||  |||||| |||||||||||||||||||| |||||||| || ||||||| ||   ||| |  |||||||||||||||||||||||    
T  46516198 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaactcaagagat--cctcactacaaagacactcaaccctaaagtt 46516106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 669 - 798
Target Start/End: Complemental strand, 9235562 - 9235434
Alignment:
Q  669 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 768  Q
    ||||||||| |||||||||||||||||||||||  |||| | ||||| | || ||| ||||||||||||||| ||| ||         |||||| ||||     
T  9235562 aaagaacaagtcctaatttctacccatttttcatatcacccgcactc-tcaacgaatcctaagagaaaacacaaaaggaagctttttgatccttgcaatg 9235464  T
Q  769 atgaaatttcactacccaaggtgtttacaa 798  Q
     |||||| |||||| |||||||||||||||    
T  9235463 gtgaaatatcactatccaaggtgtttacaa 9235434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 670 - 798
Target Start/End: Original strand, 29159922 - 29160050
Alignment:
Q  670 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataa-atgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 768  Q
    ||||||||  ||||||||||||||||||||   ||||| ||| |||| || ||||| ||||||||||||||| ||| ||         |||||||||||     
T  29159922 aagaacaagacctaatttctacccatttttgt-gtcacccactctcacaatatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatg 29160020  T
Q  769 atgaaatttcactacccaaggtgtttacaa 798  Q
     |||||| ||||||||||||||||||||||    
T  29160021 ttgaaatctcactacccaaggtgtttacaa 29160050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 566 - 610
Target Start/End: Complemental strand, 28617378 - 28617334
Alignment:
Q  566 cacaagcatattcaaagcaacaaagataattaagagaggaagaaa 610  Q
    |||||||||||||||||||||||||||||  |||| |||||||||    
T  28617378 cacaagcatattcaaagcaacaaagataagcaagaaaggaagaaa 28617334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 664 - 698
Target Start/End: Original strand, 24526017 - 24526051
Alignment:
Q  664 ctcacaaagaacaaatcctaatttctacccatttt 698  Q
    ||||||||||||||| |||||||||||||||||||    
T  24526017 ctcacaaagaacaaaacctaatttctacccatttt 24526051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 656 - 701
Target Start/End: Complemental strand, 28617219 - 28617173
Alignment:
Q  656 gcttaaaa-ctcacaaagaacaaatcctaatttctacccatttttca 701  Q
    |||||||| ||||||||||||||| ||||||||||||| ||||||||    
T  28617219 gcttaaaagctcacaaagaacaaaacctaatttctacctatttttca 28617173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Original strand, 56153 - 56194
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  56153 atccttccaatggtgaaatctcactacccaaggtgtttacaa 56194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Original strand, 2479540 - 2479581
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  2479540 atccttccaatggtgaaatctcactacccaaggtgtttacaa 2479581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 662 - 719
Target Start/End: Complemental strand, 4162756 - 4162699
Alignment:
Q  662 aactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataa 719  Q
    ||||||||||||||||||| ||||||||||  |||||||| |||| ||| || |||||    
T  4162756 aactcacaaagaacaaatcataatttctacttatttttcaagtcattcaaacccataa 4162699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Complemental strand, 4796561 - 4796520
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  4796561 atccttccaatggtgaaatctcactacccaaggtgtttacaa 4796520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Original strand, 21640014 - 21640055
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  21640014 atccttccaatggtgaaatctcactacccaaggtgtttacaa 21640055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Original strand, 21646212 - 21646253
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  21646212 atccttccaatggtgaaatctcactacccaaggtgtttacaa 21646253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Original strand, 21983490 - 21983531
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  21983490 atccttccaatggtgaaatctcactacccaaggtgtttacaa 21983531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 665 - 848
Target Start/End: Complemental strand, 31513314 - 31513135
Alignment:
Q  665 tcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttcc 764  Q
    |||||||||||||| ||||||||||||| |||||  | ||||  |||||||| || |||| ||||||||||||||||||| ||         ||||||||    
T  31513314 tcacaaagaacaaa-cctaatttctacctattttcga-gtcatccacactcacaa-tgaatcctaagagaaaacactaaa-gatttttttttatccttcc 31513219  T
Q  765 aataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaa 848  Q
      ||||||||| ||||||  |||||||||||||||||||||||| | ||||||||||||||||| | ||||||||| |||||||    
T  31513218 tctaatgaaatctcactattcaaggtgtttacaaatgtttctcaacccaagaaataaactctcatcgaagacactcgaccctaa 31513135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 664 - 856
Target Start/End: Original strand, 3051232 - 3051420
Alignment:
Q  664 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 763  Q
    ||||||||||||||| | |||||||||||||||||||| |||||| |||||| | |||||| ||||||||||| ||| ||| ||         ||| |||    
T  3051232 ctcacaaagaacaaaacttaatttctacccatttttcatgtcacttacactc-tcaatgaatcctaagagaaagcacaaaaggaagctttttgatctttc 3051330  T
Q  764 caataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttctct 856  Q
    ||||  |||||| |||||||||||| ||||||| |||||||| || ||||||  | || | | |  |||||||||||||||||||||||||||    
T  3051331 caatggtgaaatctcactacccaagatgtttac-aatgtttcccaactcaag--agaaccccactacaaagacactcaaccctaaagttctct 3051420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 670 - 798
Target Start/End: Complemental strand, 19752372 - 19752246
Alignment:
Q  670 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 769  Q
    |||||||| |||||||||||||||||||||||  |||| ||||||| | |||||| ||||||||||||||| ||| ||         ||||||||||| |    
T  19752372 aagaacaagtcctaatttctacccatttttcatatcacccacactc-tcaatgaatcctaagagaaaacac-aaaggaagctttttgatccttccaatga 19752275  T
Q  770 tgaaatttcactacccaaggtgtttacaa 798  Q
    |||||| ||||||||||||||||||||||    
T  19752274 tgaaatctcactacccaaggtgtttacaa 19752246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 671 - 854
Target Start/End: Complemental strand, 8863604 - 8863425
Alignment:
Q  671 agaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataat 770  Q
    |||||||| | |||||||||||||||||||| ||||||||||| |||||||||| |  ||||||||||| |||| ||         |||||   ||||||    
T  8863604 agaacaaaccttaatttctacccatttttcaagtcactcacacacataaatgaatctaaagagaaaacattaaagga-agattttaatcct---aataat 8863509  T
Q  771 gaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttct 854  Q
    ||||| |||||| |||| |||||||||| ||||||  | |  |||||||||| | ||||| ||||||||||| | |||||||||    
T  8863508 gaaatctcactaaccaatgtgtttacaactgtttcctagcctaagaaataaattttcaccgaagacactcaaacttaaagttct 8863425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 666 - 739
Target Start/End: Complemental strand, 9054820 - 9054748
Alignment:
Q  666 cacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaaca 739  Q
    |||||||||||||  ||||||||||||||||||||| ||||||||||||| | |||||| ||||||||||||||    
T  9054820 cacaaagaacaaaatctaatttctacccatttttcaagtcactcacactc-tcaatgaatcctaagagaaaaca 9054748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 664 - 798
Target Start/End: Complemental strand, 7493158 - 7493025
Alignment:
Q  664 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 763  Q
    |||||| |||||||| |||||||||||||  ||||||| ||||| ||||||| | ||| || ||||||| ||||||||||| ||         |||||||    
T  7493158 ctcacacagaacaaaacctaatttctacctgtttttcaagtcacccacactc-tcaataaatcctaagaaaaaacactaaaggaagctttttgatccttc 7493060  T
Q  764 caataatgaaatttcactacccaaggtgtttacaa 798  Q
     |||  |||||| ||||||||||||||||||||||    
T  7493059 taattgtgaaatctcactacccaaggtgtttacaa 7493025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 664 - 713
Target Start/End: Original strand, 6813795 - 6813845
Alignment:
Q  664 ctcacaaagaacaaatcctaattt-ctacccatttttcacgtcactcacac 713  Q
    ||||||||||||||| |||||||| |||||||||||||| |||||||||||    
T  6813795 ctcacaaagaacaaaacctaattttctacccatttttcaagtcactcacac 6813845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 757 - 798
Target Start/End: Complemental strand, 19175647 - 19175606
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||| |||||| ||||||||||||||||||||||    
T  19175647 atccttccaatagtgaaatctcactacccaaggtgtttacaa 19175606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 757 - 852
Target Start/End: Original strand, 7412544 - 7412636
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 852  Q
    |||||| ||||  |||||| |||||||||||||||||||||| |||||| || | ||||| ||   |||||  |||||||||||||||||||||||    
T  7412544 atcctttcaatggtgaaatctcactacccaaggtgtttacaa-tgtttcccaacccaagagatc--ctctctacaaagacactcaaccctaaagtt 7412636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 670 - 798
Target Start/End: Complemental strand, 26403208 - 26403081
Alignment:
Q  670 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataa-atgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 768  Q
    ||||||||  |||||||||||||||||||    ||||||||| |||| || ||||| | ||||||||||||| ||| ||         |||||||||||     
T  26403208 aagaacaagacctaatttctacccattttgt--gtcactcactctcacaatatgaatcataagagaaaacacaaaaggaagctttttgatccttccaatg 26403111  T
Q  769 atgaaatttcactacccaaggtgtttacaa 798  Q
     |||||| ||||||||||||||||||||||    
T  26403110 gtgaaatctcactacccaaggtgtttacaa 26403081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 664 - 698
Target Start/End: Complemental strand, 30291654 - 30291620
Alignment:
Q  664 ctcacaaagaacaaatcctaatttctacccatttt 698  Q
    ||||||||||||||| |||||||||||||||||||    
T  30291654 ctcacaaagaacaaaacctaatttctacccatttt 30291620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 744
Target Start/End: Complemental strand, 5990555 - 5990467
Alignment:
Q  656 gcttaaaa-ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaa 744  Q
    |||||||| |||||||||||||   ||| ||||  |||||||||||| ||||| ||||||  | |||||| |||||||||||||||||||    
T  5990555 gcttaaaagctcacaaagaacacgacctcattttcacccatttttcaagtcacccacactt-tcaatgaatcctaagagaaaacactaaa 5990467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 823 - 852
Target Start/End: Original strand, 11712237 - 11712266
Alignment:
Q  823 ctctcaccaaagacactcaaccctaaagtt 852  Q
    ||||||||||||||||||||||||||||||    
T  11712237 ctctcaccaaagacactcaaccctaaagtt 11712266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Original strand, 26288096 - 26288137
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  26288096 atccttccaatggtgaaatctcactacccaaggtgtttacaa 26288137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Original strand, 26301353 - 26301394
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  26301353 atccttccaatggtgaaatctcactacccaaggtgtttacaa 26301394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Original strand, 26313347 - 26313388
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  26313347 atccttccaatggtgaaatctcactacccaaggtgtttacaa 26313388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Complemental strand, 31071120 - 31071079
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  31071120 atccttccaatggtgaaatctcactacccaaggtgtttacaa 31071079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 665 - 853
Target Start/End: Complemental strand, 30518112 - 30517922
Alignment:
Q  665 tcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttcc 764  Q
    |||||||||||||| | ||||||||||| |||||||| || || |||||||| ||||||| | || |||||||||||||| ||         ||||||||    
T  30518112 tcacaaagaacaaaccttaatttctacctatttttcaagttacccacactcacaaatgaatctta-gagaaaacactaaaggaagtttttg-atccttcc 30518015  T
Q  765 aataatgaaat----ttcactacccaaggtgtttacaaatgttt-ctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttc 853  Q
    |||||||||||     |||||||||||  | ||||||||||||| || |||| ||||||||||||||||||||||||||||||| |||||||||    
T  30518014 aataatgaaatctcactcactacccaaaatatttacaaatgtttcctaatct-aagaaataaactctcaccaaagacactcaactctaaagttc 30517922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 660 - 805
Target Start/End: Complemental strand, 33721548 - 33721404
Alignment:
Q  660 aaaactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatc 759  Q
    |||||||| |||||||||| ||||||||   ||||||||| | ||||| ||||||| |||||||| ||||||||||||||||||| |          |||    
T  33721548 aaaactcataaagaacaaaacctaattttcccccattttttaggtcacacacactcctaaatgaatcctaagagaaaacactaaagggagctttttcatc 33721449  T
Q  760 cttccaataatgaaatttcactacccaaggtgtttacaaatgtttc 805  Q
     ||||||||||||||| |||||| | ||||||||||||||||||||    
T  33721448 attccaataatgaaatctcacta-caaaggtgtttacaaatgtttc 33721404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 670 - 798
Target Start/End: Original strand, 31936695 - 31936820
Alignment:
Q  670 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 769  Q
    ||||||||||||||||||||||||||||||||  |||| ||||||| | |||||| |||||||||||||||  || ||         |||||||||||      
T  31936695 aagaacaaatcctaatttctacccatttttcatatcacccacactc-tcaatgaatcctaagagaaaacac--aaagaagctttttgatccttccaatgg 31936791  T
Q  770 tgaaatttcactacccaaggtgtttacaa 798  Q
    |||||| ||||||||||||||||||||||    
T  31936792 tgaaatctcactacccaaggtgtttacaa 31936820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 664 - 798
Target Start/End: Original strand, 14521785 - 14521919
Alignment:
Q  664 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 763  Q
    ||||||||||||| | |||||||||||| ||||||||| ||||| ||||||| | ||| || |||||||||||||| |||| ||         |||||||    
T  14521785 ctcacaaagaacacaacctaatttctacacatttttcatgtcacccacactc-tcaataaatcctaagagaaaacattaaaggaagattttttatccttc 14521883  T
Q  764 caataatgaaatt-tcactacccaaggtgtttacaa 798  Q
    ||||  ||||||| ||||||||||||||||||||||    
T  14521884 caatggtgaaattctcactacccaaggtgtttacaa 14521919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 680 - 852
Target Start/End: Complemental strand, 24435939 - 24435773
Alignment:
Q  680 cctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataatgaaatttca 779  Q
    |||||||||||||||||||| |  |||| |||| |||||| |||| ||||||||||||||| ||| ||         |||||||||||  |||||| |||    
T  24435939 cctaatttctacccattttt-atatcacccacattcataa-tgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctca 24435842  T
Q  780 ctacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 852  Q
    ||||||||||||||||| |||||||| || ||||||  | || ||| || |||||||||||||||||||||||    
T  24435841 ctacccaaggtgtttac-aatgtttcccaactcaag--agaacctcaca-caaagacactcaaccctaaagtt 24435773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 669 - 852
Target Start/End: Original strand, 31979631 - 31979808
Alignment:
Q  669 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 768  Q
    |||||||||  ||||||||||||||||||||   ||||| ||||||| | |||||| ||||||||||||||| ||| ||         |||||||||||     
T  31979631 aaagaacaagacctaatttctacccatttttgt-gtcacccacactc-tcaatgaatcctaagagaaaacacaaaaggaagcttttg-atccttccaatg 31979727  T
Q  769 atgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 852  Q
     |||||| |||||||||||||||||||| ||||||||||| | ||  ||| || ||| |  |||||||||||||||||||||||    
T  31979728 gtgaaatctcactacccaaggtgtttac-aatgtttctcaaccca--aaagaacctcactacaaagacactcaaccctaaagtt 31979808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 669 - 798
Target Start/End: Complemental strand, 21801323 - 21801196
Alignment:
Q  669 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 768  Q
    |||||||||  | |||||||||||||||||    ||||| |||||||  ||||||||||||||||||||||| ||| ||         |||||||||||     
T  21801323 aaagaacaagacttaatttctacccattttgt--gtcacccacactctcaaatgaaccctaagagaaaacacaaaaggaagctttttgatccttccaatg 21801226  T
Q  769 atgaaatttcactacccaaggtgtttacaa 798  Q
     |||||| ||||||||||||||||||||||    
T  21801225 ttgaaatctcactacccaaggtgtttacaa 21801196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 430 - 516
Target Start/End: Original strand, 98967 - 99055
Alignment:
Q  430 ttttattgtgaattcaaacaaataa-tcaaaccaataaa-cttagatgtgtagagtaaagtaagtagtaatcaaagagtaaagtagtct 516  Q
    ||||||||||||||| | ||||||| |||  |||||||| |||| | |||| |||||||| ||||||||||||| ||| ||||||||||    
T  98967 ttttattgtgaattcgagcaaataaatcacgccaataaaacttaaacgtgtggagtaaaggaagtagtaatcaatgagcaaagtagtct 99055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 664 - 698
Target Start/End: Complemental strand, 16569081 - 16569047
Alignment:
Q  664 ctcacaaagaacaaatcctaatttctacccatttt 698  Q
    ||||||||||||||| |||||||||||||||||||    
T  16569081 ctcacaaagaacaaaacctaatttctacccatttt 16569047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 760 - 798
Target Start/End: Original strand, 21356244 - 21356282
Alignment:
Q  760 cttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  21356244 cttccaatgatgaaatctcactacccaaggtgtttacaa 21356282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 761 - 798
Target Start/End: Complemental strand, 5572132 - 5572095
Alignment:
Q  761 ttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  5572132 ttccaatagtgaaatctcactacccaaggtgtttacaa 5572095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Complemental strand, 5757371 - 5757330
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  5757371 atccttccaatggtgaaatctcactacccaaggtgtttacaa 5757330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Original strand, 18233050 - 18233091
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  18233050 atccttccaatggtgaaatctcactacccaaggtgtttacaa 18233091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Original strand, 22963903 - 22963944
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  22963903 atccttccaatggtgaaatctcactacccaaggtgtttacaa 22963944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Complemental strand, 23824490 - 23824449
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  23824490 atccttccaatggtgaaatctcactacccaaggtgtttacaa 23824449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 51; Significance: 9e-20; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 664 - 853
Target Start/End: Complemental strand, 102479 - 102292
Alignment:
Q  664 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 763  Q
    |||||||| |||||| |||||||||||||||||||||| ||||| ||||||||| ||| ||  | |||||||||||||||| ||         |||||||    
T  102479 ctcacaaaaaacaaaccctaatttctacccatttttcaagtcacacacactcat-aataaattcgaagagaaaacactaaaggatgctttttgatccttc 102381  T
Q  764 caataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttc 853  Q
    |  |||| |||| | |||  ||||||||||| |||||||||  || | | ||||||||| |||||||||| ||||||||| |||||||||    
T  102380 ctctaataaaatcttacttaccaaggtgttttcaaatgttttccaaccctagaaataaaatctcaccaaa-acactcaacactaaagttc 102292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 9e-20; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 660 - 853
Target Start/End: Original strand, 2630339 - 2630530
Alignment:
Q  660 aaaactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatc 759  Q
    ||||| ||||||||||||| |||||||| ||  ||||||||| ||||| | ||||||  |||||| ||||||||||||||||||| ||         |||    
T  2630339 aaaacacacaaagaacaaaacctaatttttatacatttttcaagtcaccctcactca-caatgaatcctaagagaaaacactaaaggaagctttttgatc 2630437  T
Q  760 cttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttc 853  Q
    ||| ||||  ||||||||||||| | ||| ||||| ||||||||||| | |  || |||||||||||||||||| || ||||||| ||||||||    
T  2630438 ctttcaatggtgaaatttcactatcaaagatgtttgcaaatgtttcttaaccaaataaataaactctcaccaaa-actctcaaccataaagttc 2630530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 670 - 852
Target Start/End: Complemental strand, 31300574 - 31300396
Alignment:
Q  670 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 769  Q
    |||||||| ||||||||||||||||||| |||  |||| ||||||| | |||||| ||||||||||||||| ||| ||         |||||||||||      
T  31300574 aagaacaagtcctaatttctacccatttctcatatcacccacactc-tcaatgaatcctaagagaaaacacaaaaggaagccttttgatccttccaatgg 31300476  T
Q  770 tgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 852  Q
    |||||| |||||||||||||||||||| ||||||||||| | ||||  | || ||| |  ||||||||||||||| |||||||    
T  31300475 tgaaatctcactacccaaggtgtttac-aatgtttctcaacccaag--agaacctcactacaaagacactcaaccttaaagtt 31300396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 669 - 798
Target Start/End: Original strand, 28832374 - 28832502
Alignment:
Q  669 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 768  Q
    ||||||||| | |||||||||||||||||||||  |||| ||||||| | |||||| ||||||||||||||| ||| ||         |||||||||||     
T  28832374 aaagaacaagttctaatttctacccatttttcatatcacccacactc-tcaatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatg 28832472  T
Q  769 atgaaatttcactacccaaggtgtttacaa 798  Q
     |||||| ||||||||||||||||||||||    
T  28832473 gtgaaatctcactacccaaggtgtttacaa 28832502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 656 - 736
Target Start/End: Complemental strand, 33030934 - 33030854
Alignment:
Q  656 gcttaaaa-ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaa 736  Q
    |||||||| ||||||||||||||| | |||||||||||||||||||| ||||||||||||| | |||||| |||||||||||    
T  33030934 gcttaaaagctcacaaagaacaaaacataatttctacccatttttcaagtcactcacactc-tcaatgaatcctaagagaaa 33030854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 661 - 740
Target Start/End: Original strand, 6741961 - 6742039
Alignment:
Q  661 aaactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacac 740  Q
    |||||||||||||||||| |||||||||||| ||||||||| ||||| ||||||| | |||||| ||||||| |||||||    
T  6741961 aaactcacaaagaacaaaacctaatttctactcatttttcaagtcacccacactc-tcaatgaatcctaagaaaaaacac 6742039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 680 - 798
Target Start/End: Complemental strand, 11181800 - 11181684
Alignment:
Q  680 cctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataatgaaatttca 779  Q
    ||||||||||||||||||| || ||||| |||||||| || |||| ||||||||||||||| ||| ||         |||||||||||  ||||||||||    
T  11181800 cctaatttctacccatttt-catgtcacccacactcacaa-tgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatttca 11181703  T
Q  780 ctacccaaggtgtttacaa 798  Q
    |||||||||||||||||||    
T  11181702 ctacccaaggtgtttacaa 11181684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 453 - 518
Target Start/End: Original strand, 34842436 - 34842500
Alignment:
Q  453 aatcaaaccaataaacttagatgtgtagagtaaagtaagtagtaatcaaagagtaaagtagtctca 518  Q
    ||||| |||||||||||||||||||| |||||||| ||||||||||| ||||||||||||| ||||    
T  34842436 aatcacaccaataaacttagatgtgtggagtaaaggaagtagtaatc-aagagtaaagtagcctca 34842500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 665 - 739
Target Start/End: Original strand, 3651613 - 3651686
Alignment:
Q  665 tcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaaca 739  Q
    |||||||||||||| |||||||||||||||||||||| |||||||| ||  || |||||| ||||||| ||||||    
T  3651613 tcacaaagaacaaaccctaatttctacccatttttcaagtcactcaaacctat-aatgaatcctaagataaaaca 3651686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 669 - 794
Target Start/End: Complemental strand, 42127390 - 42127266
Alignment:
Q  669 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 768  Q
    ||||||||| ||||| |||||||||||||||||  |||| ||||||| | |||||| ||||||||||||||| |||  |         |||||||||||     
T  42127390 aaagaacaagtcctactttctacccatttttcatatcacccacactc-tcaatgaatcctaagagaaaacacaaaagaaagctttttgatccttccaatg 42127292  T
Q  769 atgaaatttcactacccaaggtgttt 794  Q
     |||||| ||||||||||||||||||    
T  42127291 gtgaaatctcactacccaaggtgttt 42127266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 782 - 849
Target Start/End: Complemental strand, 3325885 - 3325821
Alignment:
Q  782 acccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaa 849  Q
    ||||||||||||||||||||||||||| |||||||    ||| |||||||||||||||| ||||||||    
T  3325885 acccaaggtgtttacaaatgtttctcaactcaaga---gaacactcaccaaagacactcgaccctaaa 3325821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 757 - 852
Target Start/End: Original strand, 30900070 - 30900161
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 852  Q
    ||||||||  ||||||||| ||||||||||||||||||| |||||||   || ||||||  |||| | ||||| ||| ||||||||||||||||||    
T  30900070 atccttcctctaatgaaatctcactacccaaggtgtttataaatgtt--ccaactcaag--ataacccctcacaaaatacactcaaccctaaagtt 30900161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 665 - 744
Target Start/End: Original strand, 5611255 - 5611333
Alignment:
Q  665 tcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaa 744  Q
    ||||||||||||||  || ||||||| |||||||| | ||||   ||||||||||||||  |||||||||||||||||||    
T  5611255 tcacaaagaacaaaatcttatttctatccatttttaa-gtcataaacactcataaatgattcctaagagaaaacactaaa 5611333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 670 - 798
Target Start/End: Original strand, 10281870 - 10281997
Alignment:
Q  670 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataa-atgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 768  Q
    ||||||||  |||||||||||||||||||    ||||| |||||||| || ||||| ||||||||||||||| |||  |         |||||||||||     
T  10281870 aagaacaagacctaatttctacccattttgt--gtcacccacactcacaatatgaatcctaagagaaaacacaaaagaaagctttttgatccttccaatg 10281967  T
Q  769 atgaaatttcactacccaaggtgtttacaa 798  Q
     |||||| ||||||||||||||||||||||    
T  10281968 gtgaaatctcactacccaaggtgtttacaa 10281997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 670 - 798
Target Start/End: Complemental strand, 17003938 - 17003811
Alignment:
Q  670 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataa-atgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 768  Q
    ||||||||  ||||||||||||||||||   |  |||||||| |||| || ||||| ||||||||||||||| ||| ||         |||||||||||     
T  17003938 aagaacaagacctaatttctacccattta--atttcactcactctcacaatatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatg 17003841  T
Q  769 atgaaatttcactacccaaggtgtttacaa 798  Q
     |||||| ||||||||||||||||||||||    
T  17003840 gtgaaatctcactacccaaggtgtttacaa 17003811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Complemental strand, 9353225 - 9353184
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  9353225 atccttccaatggtgaaatctcactacccaaggtgtttacaa 9353184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Complemental strand, 11916865 - 11916824
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  11916865 atccttccaatggtgaaatctcactacccaaggtgtttacaa 11916824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 661 - 698
Target Start/End: Complemental strand, 31183022 - 31182986
Alignment:
Q  661 aaactcacaaagaacaaatcctaatttctacccatttt 698  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  31183022 aaactcacaaagaacaa-tcctaatttctacccatttt 31182986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Complemental strand, 36932241 - 36932200
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  36932241 atccttccaatggtgaaatctcactacccaaggtgtttacaa 36932200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Original strand, 38219604 - 38219645
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  38219604 atccttccaatggtgaaatctcactacccaaggtgtttacaa 38219645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 757 - 853
Target Start/End: Complemental strand, 8310 - 8217
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttc 853  Q
    |||||||||||  |||||| |||||||||||||||||||| |||||||| || | ||||| ||   ||| |  ||||||||||||||||||||||||    
T  8310 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaagagat--cctcactacaaagacactcaaccctaaagttc 8217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Original strand, 10935 - 10976
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  10935 atccttccaatggtgaaatctcactacccaaggtgtttacaa 10976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Original strand, 45402 - 45443
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  45402 atccttccaatggtgaaatctcactacccaaggtgtttacaa 45443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Complemental strand, 36725 - 36684
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  36725 atccttccaatggtgaaatctcactacccaaggtgtttacaa 36684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Complemental strand, 43854 - 43813
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  43854 atccttccaatggtgaaatctcactacccaaggtgtttacaa 43813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 744
Target Start/End: Complemental strand, 15977 - 15895
Alignment:
Q  660 aaaactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaa 744  Q
    ||||| ||||||||||||| ||||||||   ||||||||||  ||||  ||||||||||||||||  |||| |||| ||||||||    
T  15977 aaaacccacaaagaacaaaacctaattttcccccatttttctggtca--cacactcataaatgaattctaaaagaagacactaaa 15895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 435 - 507
Target Start/End: Complemental strand, 16263 - 16190
Alignment:
Q  435 ttgtgaattcaaacaaataatcaaaccaataaa-cttagatgtgtagagtaaagtaagtagtaatcaaagagta 507  Q
    |||||||||  ||| |||||| | ||||||||| ||||||||||| ||| |||| ||||||||||||| |||||    
T  16263 ttgtgaatttgaactaataattacaccaataaaacttagatgtgtcgagcaaaggaagtagtaatcaatgagta 16190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Original strand, 5889 - 5930
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  5889 atccttccaatggtgaaatctcactacccaaggtgtttacaa 5930  T

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Target: scaffold0006; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 798
Target Start/End: Complemental strand, 133172 - 133131
Alignment:
Q  757 atccttccaataatgaaatttcactacccaaggtgtttacaa 798  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  133172 atccttccaatggtgaaatctcactacccaaggtgtttacaa 133131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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