View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11693_low_12 (Length: 299)
Name: NF11693_low_12
Description: NF11693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11693_low_12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 74 - 195
Target Start/End: Complemental strand, 3313110 - 3312989
Alignment:
| Q |
74 |
tagtaatataccataattttatatgttgtttcaataaggtcagcaatgtggtcatccatcactacgagtctataagtgttatgttatattatatgtttag |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3313110 |
tagtaatataccataattttatatgttgtttcaataaggtcagcaatgtggtcctccatcactacgagtctataagtgttacgttatattatatgtttag |
3313011 |
T |
|
| Q |
174 |
tgggtctctgtcttttatggag |
195 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
3313010 |
tgggtctctgtcttttatggag |
3312989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 229 - 272
Target Start/End: Complemental strand, 3312946 - 3312903
Alignment:
| Q |
229 |
gtcctttaattatgtaacttgtaagccctttaactatggatgta |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3312946 |
gtcctttaattatgtaacttgtaagccctttaactatggatgta |
3312903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 74 - 194
Target Start/End: Original strand, 24537500 - 24537620
Alignment:
| Q |
74 |
tagtaatataccataattttatatgttgtttcaataaggtcagcaatgtggtcatccatcactacgagtctataagtgttatgttatattatatgtttag |
173 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||||||||||||||||| | ||||||||| |||||||| ||||||||| |||||||||||| ||| |
|
|
| T |
24537500 |
tagtaatataccatgattttatatgatgtttcaataaggtcagcaatgtggccccccatcactatgagtctatgagtgttatggtatattatatgtctag |
24537599 |
T |
|
| Q |
174 |
tgggtctctgtcttttatgga |
194 |
Q |
| |
|
||| ||| ||||||||||||| |
|
|
| T |
24537600 |
tggatctttgtcttttatgga |
24537620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University